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[PRE REVIEW]: Lumabi: a Python package to streamline the computation of phonon-resolved luminescence spectra of defects and dopants in solids #8522

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@editorialbot

Submitting author: @jbouquiaux (Julien Bouquiaux)
Repository: https://github.com/jbouquiaux/Lumabi_JOSS
Branch with paper.md (empty if default branch):
Version: v1.0.0
Editor: Pending
Reviewers: Pending
Managing EiC: Kevin M. Moerman

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HTML: <a href="https://joss.theoj.org/papers/84524e15cc66bf85e291e5c6cfc1b881"><img src="https://joss.theoj.org/papers/84524e15cc66bf85e291e5c6cfc1b881/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/84524e15cc66bf85e291e5c6cfc1b881/status.svg)](https://joss.theoj.org/papers/84524e15cc66bf85e291e5c6cfc1b881)

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Activity

  1. editorialbot commented on Jul 1, 2025

    @editorialbot
    CollaboratorAuthor

    Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

    For a list of things I can do to help you, just type:

    @editorialbot commands
    

    For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

    @editorialbot generate pdf
    
  2. editorialbot commented on Jul 1, 2025

    @editorialbot
    CollaboratorAuthor

    ⚠️ An error happened when generating the pdf. Problem with affiliations for Julien Bouquiaux, perhaps the affiliations index need quoting?.

  3. editorialbot commented on Jul 1, 2025

    @editorialbot
    CollaboratorAuthor

    Software report:

    github.com/AlDanial/cloc v 1.98  T=0.01 s (474.2 files/s, 79905.1 lines/s)
    -------------------------------------------------------------------------------
    Language                     files          blank        comment           code
    -------------------------------------------------------------------------------
    TeX                              1             27              0            475
    Markdown                         1             37              0            105
    YAML                             1              1              4             19
    Bourne Shell                     1              0              0              6
    -------------------------------------------------------------------------------
    SUM:                             4             65              4            605
    -------------------------------------------------------------------------------
    

    Commit count by author:

        16	Julien Bouquiaux
         6	gonzex
         3	Samuel Ponce
         2	Matteo Giantomassi
    
  4. editorialbot commented on Jul 1, 2025

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    Paper file info:

    🚨 Wordcount for paper.md is 2020

    ✅ The paper includes a Statement of need section

  5. editorialbot commented on Jul 1, 2025

    @editorialbot
    CollaboratorAuthor

    License info:

    🔴 Failed to discover a valid open source license

  6. editorialbot commented on Jul 1, 2025

    @editorialbot
    CollaboratorAuthor
    Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
    
    ✅ OK DOIs
    
    - 10.1051/0004-6361/201629272 is OK
    - 10.1051/0004-6361/201322068 is OK
    - 10.21105/joss.06433 is OK
    
    🟡 SKIP DOIs
    
    - No DOI given, and none found for title: Gaps in Globular Cluster Streams: Pal 5 and the Ga...
    - No DOI given, and none found for title: Galactic Dynamics: Second Edition
    - No DOI given, and none found for title: Fidgit: An ungodly union of GitHub and Figshare
    - No DOI given, and none found for title: The ABINIT project: Impact, environment and recent...
    - No DOI given, and none found for title: Recent developments in the ABINIT software package
    - No DOI given, and none found for title: Reproducibility in density functional theory calcu...
    - No DOI given, and none found for title: A revolution in lighting
    - No DOI given, and none found for title: Inorganic Phosphor Materials for Lighting
    - No DOI given, and none found for title: Recent developments in the ABINIT software package
    - No DOI given, and none found for title: The ABINIT project: Impact, environment and recent...
    - No DOI given, and none found for title: First-principles study of the luminescence of Eu^2...
    - No DOI given, and none found for title: Importance of Long-Range Channel Sr Displacements ...
    - No DOI given, and none found for title: VESTA 3 for three-dimensional visualization of cry...
    - No DOI given, and none found for title: Machine Learning a Phosphor’s Excitation Band Posi...
    
    ❌ MISSING DOIs
    
    - 10.1016/s0927-0256(02)00325-7 may be a valid DOI for title: First-principles computation of material propertie...
    - 10.1016/j.cpc.2009.07.007 may be a valid DOI for title: ABINIT: First-principles approach to material and ...
    - 10.1038/s42254-023-00655-3 may be a valid DOI for title: How to verify the precision of density-functional-...
    - 10.1038/s41578-021-00306-y may be a valid DOI for title: Quantum guidelines for solid-state spin defects
    - 10.1146/annurev-matsci-070317-124453 may be a valid DOI for title: First-principles calculations of point defects for...
    - 10.1021/acs.chemrev.1c00952 may be a valid DOI for title: Evolutionary generation of phosphor materials and ...
    - 10.1142/9789812793720_0007 may be a valid DOI for title: Theory of light absorption and non-radiative trans...
    - 10.1103/physrevmaterials.5.084603 may be a valid DOI for title: Photoluminescence spectra of point defects in semi...
    - 10.1016/j.cpc.2018.01.011 may be a valid DOI for title: CoFFEE: corrections for formation energy and eigen...
    - 10.1016/j.cplett.2017.01.001 may be a valid DOI for title: Presentation of the PyDEF post-treatment Python so...
    - 10.1016/j.commatsci.2016.12.040 may be a valid DOI for title: A computational framework for automation of point ...
    - 10.1016/j.cpc.2018.01.004 may be a valid DOI for title: PyCDT: A Python toolkit for modeling point defects...
    - 10.1103/physrevmaterials.5.123803 may be a valid DOI for title: Insights into oxygen vacancies from high-throughpu...
    - 10.1016/j.commatsci.2022.111434 may be a valid DOI for title: DefAP: A Python code for the analysis of point def...
    - 10.1016/j.cpc.2021.107946 may be a valid DOI for title: Spinney: Post-processing of first-principles calcu...
    - 10.21105/joss.05941 may be a valid DOI for title: pymatgen-analysis-defects: A Python package for an...
    - 10.1016/j.cpc.2021.108056 may be a valid DOI for title: Nonrad: Computing nonradiative capture coefficient...
    - 10.2139/ssrn.4864809 may be a valid DOI for title: Ab-Initio Simulation of Luminescence Spectra in So...
    - 10.1016/0927-0256(96)00008-0 may be a valid DOI for title: Efficiency of ab-initio total energy calculations ...
    - 10.1088/1367-2630/16/7/073026 may be a valid DOI for title: First-principles theory of the luminescence linesh...
    - 10.1016/s0927-0256(02)00325-7 may be a valid DOI for title: First-principles computation of material propertie...
    - 10.1016/j.cpc.2009.07.007 may be a valid DOI for title: ABINIT: First-principles approach to material and ...
    - 10.1016/j.commatsci.2012.10.028 may be a valid DOI for title: Python Materials Genomics (pymatgen): A robust, op...
    - 10.1016/j.scriptamat.2015.07.021 may be a valid DOI for title: First principles phonon calculations in materials ...
    - 10.7566/jpsj.92.012001 may be a valid DOI for title: First-principles phonon calculations with phonopy ...
    - 10.1103/revmodphys.61.689 may be a valid DOI for title: The density functional formalism, its applications...
    - 10.1063/1.1645787 may be a valid DOI for title: Potential-energy surfaces for excited states in ex...
    - 10.1103/physrevb.55.10355 may be a valid DOI for title: Dynamical matrices, Born effective charges, dielec...
    - 10.1021/acs.chemmater.3c00537.s001 may be a valid DOI for title: A First-Principles Explanation of the Luminescent ...
    - 10.1103/physrevb.104.045303 may be a valid DOI for title: Vibrational and vibronic structure of isolated poi...
    - 10.1063/5.0154319 may be a valid DOI for title: The application of the SCAN density functional to ...
    - 10.1038/s41524-022-00928-y may be a valid DOI for title: Vibrationally resolved optical excitations of the ...
    - 10.1038/s41578-023-00605-6 may be a valid DOI for title: A guide to comprehensive phosphor discovery for so...
    
    ❌ INVALID DOIs
    
    - None
    
    
  7. Kevin-Mattheus-Moerman commented on Jul 11, 2025

    @Kevin-Mattheus-Moerman
    Member

    @jbouquiaux I will reject this submission as the repository provided does not contain an organised/mature software project. Perhaps the project seeking publication is in a different repository. JOSS submission should be fore the actual project repository. If you like you can add the paper materials in a different branch though. Feel free to resubmit if interested using the correct repository.

  8. Kevin-Mattheus-Moerman commented on Jul 11, 2025

    @Kevin-Mattheus-Moerman
    Member
  9. editorialbot commented on Jul 11, 2025

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    CollaboratorAuthor

    Paper rejected.

  10. jbouquiaux commented on Jul 15, 2025

    @jbouquiaux

    Hi @Kevin-Mattheus-Moerman, thank you for your feedback. The submission is indeed for a new feature of a software located in a different repo than this one. I plan to create a new branch in this software, specific for JOSS submission. Thanks.

  11. jbouquiaux commented on Jul 17, 2025

    @jbouquiaux

    Update:
    Hi @Kevin-Mattheus-Moerman, I wanted to let you know that I have created a new submission following your suggestions.

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