@openmicroscopy

Open Microscopy Environment

Software and data format standards for management of microscopy image data. Joint project between international private and public research

Pinned repositories

  1. bioformats

    Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Pub…

    Java 142 162

  2. openmicroscopy

    OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities,…

    Java 110 84

  3. ome-documentation

    Sphinx-based documentation for the Open Microscopy Environment

    Shell 15 38

  4. infrastructure

    A repository containing scripts for managing infrastructure

    Python 9 19

  5. www.openmicroscopy.org

    OME main website

    HTML 21

  • Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

    Java 142 162 GPL-2.0 Updated Feb 21, 2018
  • OME main website

    HTML 21 Updated Feb 21, 2018
  • OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …

    Java 110 84 GPL-2.0 Updated Feb 21, 2018
  • Dockerfile to build an ApacheDS container providing an LDAP and optionally a Kerberos service.

    Python 3 25 Updated Feb 20, 2018
  • OME tools for managing the Git(Hub) workflow

    Python 15 GPL-2.0 Updated Feb 20, 2018
  • Installs and configures OMERO.server

    Python 1 5 Updated Feb 20, 2018
  • Services running on the OME Kubernetes

    2 Updated Feb 20, 2018
  • Infrastructure for managing the Kubernetes platform in the OME

    Shell 6 Updated Feb 20, 2018
  • Sphinx-based documentation for the Open Microscopy Environment

    Shell 15 38 Updated Feb 20, 2018
  • Email tracker for IDR submissions using redmine

    Updated Feb 20, 2018
  • A repository containing scripts for managing infrastructure

    Python 9 19 1 issue needs help Updated Feb 20, 2018
  • Playbooks used by the OME team for deploying production services including OMERO

    Python 12 Updated Feb 19, 2018
  • OMERO.server production docker image

    Shell 10 Updated Feb 19, 2018
  • Test infrastructure for decoupled repositories

    Shell 7 Updated Feb 19, 2018
  • Test repository for the snoopycrimecop/snoopycrimecop code.

    12 Updated Feb 17, 2018
  • 14 Updated Feb 16, 2018
  • Shell 2 13 Updated Feb 15, 2018
  • Provision OME developer devspace

    6 Updated Feb 15, 2018
  • Jenkins slave container based on omero-ssh-systemd

    Shell 7 Updated Feb 15, 2018
  • OMERO.web production docker image

    Makefile 1 11 Updated Feb 15, 2018
  • Ruby 5 Updated Feb 14, 2018
  • Set up network interfaces with Ansible

    5 Updated Feb 14, 2018
  • Setup a kubernetes cluster

    Python 852 Updated Feb 14, 2018
  • OME Project User Guides

    HTML 15 Updated Feb 12, 2018
  • Java 2 2 GPL-3.0 Updated Feb 11, 2018
  • Ansible Role - HAProxy

    2 58 MIT Updated Feb 8, 2018
  • Python 4 Updated Feb 8, 2018
  • An OMERO.web app for prototypes and examples

    HTML 1 7 AGPL-3.0 Updated Feb 8, 2018
  • An OMERO.web app for generating Web errors

    Python 5 AGPL-3.0 Updated Feb 8, 2018
  • Examples showing how to consume Bio-Formats with Maven or Gradle

    5 GPL-2.0 Updated Feb 6, 2018