diff --git a/CHANGELOG.md b/CHANGELOG.md index 3b35a549321..a7424832bfa 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -168,6 +168,8 @@ * `transform/normalize_total` component: pass the `target_sum` argument to `sc.pp.normalize_total()` (PR #823). +* `from_cellranger_multi_to_h5mu`: fix missing `pytest` dependency (PR #897). + ## DOCUMENTATION * Update authorship of components (PR #835). diff --git a/src/convert/from_cellranger_multi_to_h5mu/config.vsh.yaml b/src/convert/from_cellranger_multi_to_h5mu/config.vsh.yaml index c64c7f84ae2..b998b26cff3 100644 --- a/src/convert/from_cellranger_multi_to_h5mu/config.vsh.yaml +++ b/src/convert/from_cellranger_multi_to_h5mu/config.vsh.yaml @@ -71,8 +71,9 @@ engines: - type: python __merge__: [/src/base/requirements/anndata_mudata.yaml, /src/base/requirements/scanpy.yaml, .] packages: - - scirpy~=0.12.0 - - pandas~=2.2.2 + - scirpy~=0.19.0 + - pytest # Scirpy has patsy as a dependency and it requires pytest + - pandas~=2.2.3 test_setup: - type: python __merge__: [ /src/base/requirements/viashpy.yaml, .]