From 338c8636aac3d25f7f33cb31d49ccd11b857235d Mon Sep 17 00:00:00 2001 From: Robrecht Cannoodt Date: Fri, 8 Aug 2025 09:22:56 +0200 Subject: [PATCH 1/4] Minor improvements to repo --- .gitignore | 1 - .vscode/settings.json | 18 ++++++++++++++++++ _viash.yaml | 2 +- 3 files changed, 19 insertions(+), 2 deletions(-) create mode 100644 .vscode/settings.json diff --git a/.gitignore b/.gitignore index b88f162..d8ce74a 100644 --- a/.gitignore +++ b/.gitignore @@ -3,7 +3,6 @@ /work /.nextflow* /target -/.vscode .DS_Store /output trace-* diff --git a/.vscode/settings.json b/.vscode/settings.json new file mode 100644 index 0000000..44f88df --- /dev/null +++ b/.vscode/settings.json @@ -0,0 +1,18 @@ +{ + "yaml.schemas": { + "common/schemas/api_component_spec.yaml": "**/api/comp_*.yaml", + "common/schemas/api_file_format.yaml": "**/api/file_*.yaml", + "common/schemas/task_config.yaml": "_viash.yaml", + "common/schemas/task_method.yaml": "**/methods/**/config.vsh.yaml", + "common/schemas/task_control_method.yaml": "**/control_methods/**/config.vsh.yaml", + "common/schemas/task_metric.yaml": "**/metrics/**/config.vsh.yaml", + "https://raw.githubusercontent.com/viash-io/viash-schemas/refs/heads/main/json_schemas/0.9.4/config.schema.json": [ + "*.vsh.yaml", + "*.vsh.yml" + ], + "https://raw.githubusercontent.com/viash-io/viash-schemas/refs/heads/main/json_schemas/0.9.4/package.schema.json": [ + "_viash.yaml", + "_viash.yml" + ] + } +} diff --git a/_viash.yaml b/_viash.yaml index 6952bf5..7404ade 100644 --- a/_viash.yaml +++ b/_viash.yaml @@ -1,4 +1,4 @@ -viash_version: 0.9.0 +viash_version: 0.9.4 name: task_predict_modality organization: openproblems-bio From 502efe3fa86f03f93ecce035404f0a1a1d7b1e42 Mon Sep 17 00:00:00 2001 From: Robrecht Cannoodt Date: Fri, 8 Aug 2025 09:25:27 +0200 Subject: [PATCH 2/4] update changelog --- CHANGELOG.md | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index f056dc7..e9a8396 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,6 +8,12 @@ * Added Simple MLP method (PR #3). +## MINOR CHANGES + +* Bump image version for `openproblems/base_*` images to 1 -- a sliding release (PR #9). + +* Bump Viash version to 0.9.4 (PR #12). + # task_predict_modality 0.1.0 Initial release after migrating the codebase. From 26a78f05fb4c4a0541f051da1b59f24fdf6ddc86 Mon Sep 17 00:00:00 2001 From: Robrecht Cannoodt Date: Fri, 8 Aug 2025 09:26:25 +0200 Subject: [PATCH 3/4] add marius as author (related to #10) --- _viash.yaml | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/_viash.yaml b/_viash.yaml index 7404ade..7bcc914 100644 --- a/_viash.yaml +++ b/_viash.yaml @@ -84,6 +84,11 @@ authors: github: daxiongshu email: jiweil@nvidia.com orcid: "0000-0002-8799-9763" + - name: Marius Lange + roles: [contributor] + info: + github: marius1311 + orcid: 0000-0002-4846-1266 links: issue_tracker: https://github.com/openproblems-bio/task_predict_modality/issues From 4e7f46aaa32c36ac292cb65bd246bdba4517b2df Mon Sep 17 00:00:00 2001 From: Robrecht Cannoodt Date: Fri, 8 Aug 2025 09:39:13 +0200 Subject: [PATCH 4/4] remove generic viash schemas --- .vscode/settings.json | 10 +--------- 1 file changed, 1 insertion(+), 9 deletions(-) diff --git a/.vscode/settings.json b/.vscode/settings.json index 44f88df..7529210 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -5,14 +5,6 @@ "common/schemas/task_config.yaml": "_viash.yaml", "common/schemas/task_method.yaml": "**/methods/**/config.vsh.yaml", "common/schemas/task_control_method.yaml": "**/control_methods/**/config.vsh.yaml", - "common/schemas/task_metric.yaml": "**/metrics/**/config.vsh.yaml", - "https://raw.githubusercontent.com/viash-io/viash-schemas/refs/heads/main/json_schemas/0.9.4/config.schema.json": [ - "*.vsh.yaml", - "*.vsh.yml" - ], - "https://raw.githubusercontent.com/viash-io/viash-schemas/refs/heads/main/json_schemas/0.9.4/package.schema.json": [ - "_viash.yaml", - "_viash.yml" - ] + "common/schemas/task_metric.yaml": "**/metrics/**/config.vsh.yaml" } }