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Package Versions for v2

This r:v2 OpenSAFELY image is based on Ubuntu 22.04 with R 4.4.3.

R packages

The image comes pre-installed with a set of R packages listed in the table below. Some packages may no longer be on CRAN and so their URL below will link to the archive of that package’s source code. Each image also contains the 14 base R packages (base, compiler, datasets, grDevices, graphics, grid, methods, parallel, splines, stats, stats4, tcltk, tools, and utils) for the respective version of R.

Package Version Url
abind 1.4-8 https://cran.r-project.org/package=abind
anytime 0.3.11 https://cran.r-project.org/package=anytime
ape 5.8-1 https://cran.r-project.org/package=ape
arrow 19.0.1 https://cran.r-project.org/package=arrow
ash 1.0-15 https://cran.r-project.org/package=ash
AsioHeaders 1.22.1-2 https://cran.r-project.org/package=AsioHeaders
askpass 1.2.1 https://cran.r-project.org/package=askpass
assertthat 0.2.1 https://cran.r-project.org/package=assertthat
astsa 2.2 https://cran.r-project.org/package=astsa
aweek 1.0.3 https://cran.r-project.org/package=aweek
backports 1.5.0 https://cran.r-project.org/package=backports
base64enc 0.1-3 https://cran.r-project.org/package=base64enc
base64url 1.4 https://cran.r-project.org/package=base64url
BayesianTools 0.1.8 https://cran.r-project.org/package=BayesianTools
bayesm 3.1-6 https://cran.r-project.org/package=bayesm
bayesplot 1.11.1 https://cran.r-project.org/package=bayesplot
bayestestR 0.15.2 https://cran.r-project.org/package=bayestestR
bbmle 1.0.25.1 https://cran.r-project.org/package=bbmle
bdsmatrix 1.3-7 https://cran.r-project.org/package=bdsmatrix
BH 1.87.0-1 https://cran.r-project.org/package=BH
bigD 0.3.0 https://cran.r-project.org/package=bigD
biglm 0.9-3 https://cran.r-project.org/package=biglm
binom 1.1-1.1 https://cran.r-project.org/package=binom
bit 4.5.0.1 https://cran.r-project.org/package=bit
bit64 4.6.0-1 https://cran.r-project.org/package=bit64
bitops 1.0-9 https://cran.r-project.org/package=bitops
blob 1.2.4 https://cran.r-project.org/package=blob
boot 1.3-31 https://cran.r-project.org/package=boot
brew 1.0-10 https://cran.r-project.org/package=brew
brglm2 0.9.2 https://cran.r-project.org/package=brglm2
bridgesampling 1.1-2 https://cran.r-project.org/package=bridgesampling
brms 2.22.0 https://cran.r-project.org/package=brms
Brobdingnag 1.2-9 https://cran.r-project.org/package=Brobdingnag
broom 1.0.7 https://cran.r-project.org/package=broom
broom.helpers 1.19.0 https://cran.r-project.org/package=broom.helpers
broom.mixed 0.2.9.6 https://cran.r-project.org/package=broom.mixed
bslib 0.9.0 https://cran.r-project.org/package=bslib
butcher 0.3.4 https://cran.r-project.org/package=butcher
ca 0.71.1 https://cran.r-project.org/package=ca
cachem 1.1.0 https://cran.r-project.org/package=cachem
callr 3.7.6 https://cran.r-project.org/package=callr
car 3.1-3 https://cran.r-project.org/package=car
carData 3.0-5 https://cran.r-project.org/package=carData
cards 0.5.1 https://cran.r-project.org/package=cards
cardx 0.2.3 https://cran.r-project.org/package=cardx
caret 7.0-1 https://cran.r-project.org/package=caret
caTools 1.18.3 https://cran.r-project.org/package=caTools
cellranger 1.1.0 https://cran.r-project.org/package=cellranger
checkmate 2.3.2 https://cran.r-project.org/package=checkmate
chk 0.10.0 https://cran.r-project.org/package=chk
class 7.3-23 https://cran.r-project.org/package=class
classInt 0.4-11 https://cran.r-project.org/package=classInt
cli 3.6.4 https://cran.r-project.org/package=cli
clipr 0.8.0 https://cran.r-project.org/package=clipr
clock 0.7.2 https://cran.r-project.org/package=clock
clue 0.3-66 https://cran.r-project.org/package=clue
cluster 2.1.8 https://cran.r-project.org/package=cluster
cmprsk 2.2-12 https://cran.r-project.org/package=cmprsk
cobalt 4.5.5 https://cran.r-project.org/package=cobalt
coda 0.19-4.1 https://cran.r-project.org/package=coda
codetools 0.2-20 https://cran.r-project.org/package=codetools
collections 0.3.7 https://cran.r-project.org/package=collections
colorspace 2.1-1 https://cran.r-project.org/package=colorspace
commonmark 1.9.2 https://cran.r-project.org/package=commonmark
conflicted 1.2.0 https://cran.r-project.org/package=conflicted
consort 1.2.2 https://cran.r-project.org/package=consort
corpcor 1.6.10 https://cran.r-project.org/package=corpcor
corrplot 0.95 https://cran.r-project.org/package=corrplot
corrr 0.4.4 https://cran.r-project.org/package=corrr
cowplot 1.1.3 https://cran.r-project.org/package=cowplot
coxme 2.2-22 https://cran.r-project.org/package=coxme
cpp11 0.5.2 https://cran.r-project.org/package=cpp11
crayon 1.5.3 https://cran.r-project.org/package=crayon
crosstalk 1.2.1 https://cran.r-project.org/package=crosstalk
curl 6.2.1 https://cran.r-project.org/package=curl
dagitty 0.3-4 https://cran.r-project.org/package=dagitty
data.table 1.17.0 https://cran.r-project.org/package=data.table
datawizard 1.0.0 https://cran.r-project.org/package=datawizard
DBI 1.2.3 https://cran.r-project.org/package=DBI
dbplyr 2.5.0 https://cran.r-project.org/package=dbplyr
dd4d 0.0.0.9000 https://opensafely-core.r-universe.dev/dd4d
deldir 2.0-4 https://cran.r-project.org/package=deldir
DEoptimR 1.1-3-1 https://cran.r-project.org/package=DEoptimR
Deriv 4.1.6 https://cran.r-project.org/package=Deriv
desc 1.4.3 https://cran.r-project.org/package=desc
deSolve 1.40 https://cran.r-project.org/package=deSolve
detectseparation 0.3 https://cran.r-project.org/package=detectseparation
dfidx 0.1-0 https://cran.r-project.org/package=dfidx
DHARMa 0.4.7 https://cran.r-project.org/package=DHARMa
diagram 1.6.5 https://cran.r-project.org/package=diagram
DiagrammeR 1.0.11 https://cran.r-project.org/package=DiagrammeR
dials 1.4.0 https://cran.r-project.org/package=dials
DiceDesign 1.10 https://cran.r-project.org/package=DiceDesign
digest 0.6.37 https://cran.r-project.org/package=digest
distributional 0.5.0 https://cran.r-project.org/package=distributional
doBy 4.6.25 https://cran.r-project.org/package=doBy
doFuture 1.0.1 https://cran.r-project.org/package=doFuture
doParallel 1.0.17 https://cran.r-project.org/package=doParallel
dplyr 1.1.4 https://cran.r-project.org/package=dplyr
DT 0.33 https://cran.r-project.org/package=DT
dtplyr 1.3.1 https://cran.r-project.org/package=dtplyr
dtw 1.23-1 https://cran.r-project.org/package=dtw
dtwclust 6.0.0 https://cran.r-project.org/package=dtwclust
duckdb 1.2.0 https://cran.r-project.org/package=duckdb
e1071 1.7-16 https://cran.r-project.org/package=e1071
effectsize 1.0.0 https://cran.r-project.org/package=effectsize
egg 0.4.5 https://cran.r-project.org/package=egg
ellipse 0.5.0 https://cran.r-project.org/package=ellipse
emmeans 1.10.7 https://cran.r-project.org/package=emmeans
emulator 1.2-24 https://cran.r-project.org/package=emulator
enrichwith 0.3.1 https://cran.r-project.org/package=enrichwith
Epi 2.59 https://cran.r-project.org/package=Epi
epitools 0.5-10.1 https://cran.r-project.org/package=epitools
estimability 1.5.1 https://cran.r-project.org/package=estimability
estimatr 1.0.6 https://cran.r-project.org/package=estimatr
etm 1.1.1 https://cran.r-project.org/package=etm
evaluate 1.0.3 https://cran.r-project.org/package=evaluate
exactRankTests 0.8-35 https://cran.r-project.org/package=exactRankTests
expm 1.0-0 https://cran.r-project.org/package=expm
fansi 1.0.6 https://cran.r-project.org/package=fansi
farver 2.1.2 https://cran.r-project.org/package=farver
fastDummies 1.7.5 https://cran.r-project.org/package=fastDummies
fastGHQuad 1.0.1 https://cran.r-project.org/package=fastGHQuad
fastmap 1.2.0 https://cran.r-project.org/package=fastmap
fastshap 0.1.1 https://cran.r-project.org/package=fastshap
fda 6.2.0 https://cran.r-project.org/package=fda
fds 1.8 https://cran.r-project.org/package=fds
finalfit 1.0.8 https://cran.r-project.org/package=finalfit
flexclust 1.5.0 https://cran.r-project.org/package=flexclust
flexsurv 2.3.2 https://cran.r-project.org/package=flexsurv
FNN 1.1.4.1 https://cran.r-project.org/package=FNN
fontawesome 0.5.3 https://cran.r-project.org/package=fontawesome
fontBitstreamVera 0.1.1 https://cran.r-project.org/package=fontBitstreamVera
fontLiberation 0.1.0 https://cran.r-project.org/package=fontLiberation
fontquiver 0.2.1 https://cran.r-project.org/package=fontquiver
forcats 1.0.0 https://cran.r-project.org/package=forcats
foreach 1.5.2 https://cran.r-project.org/package=foreach
forecast 8.23.0 https://cran.r-project.org/package=forecast
foreign 0.8-88 https://cran.r-project.org/package=foreign
forestplot 3.1.6 https://cran.r-project.org/package=forestplot
forestploter 1.1.2 https://cran.r-project.org/package=forestploter
Formula 1.2-5 https://cran.r-project.org/package=Formula
formula.tools 1.7.1 https://cran.r-project.org/package=formula.tools
fracdiff 1.5-3 https://cran.r-project.org/package=fracdiff
fs 1.6.5 https://cran.r-project.org/package=fs
furrr 0.3.1 https://cran.r-project.org/package=furrr
future 1.34.0 https://cran.r-project.org/package=future
future.apply 1.11.3 https://cran.r-project.org/package=future.apply
fuzzyjoin 0.1.6 https://cran.r-project.org/package=fuzzyjoin
gap 1.6 https://cran.r-project.org/package=gap
gap.datasets 0.0.6 https://cran.r-project.org/package=gap.datasets
gargle 1.5.2 https://cran.r-project.org/package=gargle
gclus 1.3.2 https://cran.r-project.org/package=gclus
geepack 1.3.12 https://cran.r-project.org/package=geepack
generics 0.1.3 https://cran.r-project.org/package=generics
geosphere 1.5-20 https://cran.r-project.org/package=geosphere
getopt 1.20.4 https://cran.r-project.org/package=getopt
gets 0.38 https://cran.r-project.org/package=gets
ggalluvial 0.12.5 https://cran.r-project.org/package=ggalluvial
GGally 2.2.1 https://cran.r-project.org/package=GGally
ggdist 3.3.2 https://cran.r-project.org/package=ggdist
ggeffects 2.2.0 https://cran.r-project.org/package=ggeffects
ggfittext 0.10.2 https://cran.r-project.org/package=ggfittext
ggfortify 0.4.17 https://cran.r-project.org/package=ggfortify
gggenes 0.5.1 https://cran.r-project.org/package=gggenes
ggh4x 0.3.0 https://cran.r-project.org/package=ggh4x
ggplot2 3.5.1 https://cran.r-project.org/package=ggplot2
ggpubr 0.6.0 https://cran.r-project.org/package=ggpubr
ggrepel 0.9.6 https://cran.r-project.org/package=ggrepel
ggridges 0.5.6 https://cran.r-project.org/package=ggridges
ggsci 3.2.0 https://cran.r-project.org/package=ggsci
ggsignif 0.6.4 https://cran.r-project.org/package=ggsignif
ggstats 0.8.0 https://cran.r-project.org/package=ggstats
ggtext 0.1.2 https://cran.r-project.org/package=ggtext
ggvenn 0.1.10 https://cran.r-project.org/package=ggvenn
gh 1.4.1 https://cran.r-project.org/package=gh
gitcreds 0.1.2 https://cran.r-project.org/package=gitcreds
glmmTMB 1.1.10 https://cran.r-project.org/package=glmmTMB
glmnet 4.1-8 https://cran.r-project.org/package=glmnet
globals 0.16.3 https://cran.r-project.org/package=globals
glue 1.8.0 https://cran.r-project.org/package=glue
Gmisc 3.0.3 https://cran.r-project.org/package=Gmisc
gmm 1.8 https://cran.r-project.org/package=gmm
gnm 1.1-5 https://cran.r-project.org/package=gnm
googledrive 2.1.1 https://cran.r-project.org/package=googledrive
googlesheets4 1.1.1 https://cran.r-project.org/package=googlesheets4
gower 1.0.2 https://cran.r-project.org/package=gower
GPfit 1.0-8 https://cran.r-project.org/package=GPfit
gridExtra 2.3 https://cran.r-project.org/package=gridExtra
gridtext 0.1.5 https://cran.r-project.org/package=gridtext
gt 0.11.1 https://cran.r-project.org/package=gt
gtable 0.3.6 https://cran.r-project.org/package=gtable
gtsummary 2.1.0 https://cran.r-project.org/package=gtsummary
hardhat 1.4.1 https://cran.r-project.org/package=hardhat
haven 2.5.4 https://cran.r-project.org/package=haven
HDInterval 0.2.4 https://cran.r-project.org/package=HDInterval
hdrcde 3.4 https://cran.r-project.org/package=hdrcde
here 1.0.1 https://cran.r-project.org/package=here
hexbin 1.28.5 https://cran.r-project.org/package=hexbin
highr 0.11 https://cran.r-project.org/package=highr
Hmisc 5.2-2 https://cran.r-project.org/package=Hmisc
hms 1.1.3 https://cran.r-project.org/package=hms
htmlTable 2.4.3 https://cran.r-project.org/package=htmlTable
htmltools 0.5.8.1 https://cran.r-project.org/package=htmltools
htmlwidgets 1.6.4 https://cran.r-project.org/package=htmlwidgets
httpgd 2.0.3 https://cran.r-project.org/package=httpgd
httpuv 1.6.15 https://cran.r-project.org/package=httpuv
httr 1.4.7 https://cran.r-project.org/package=httr
httr2 1.1.0 https://cran.r-project.org/package=httr2
IDPmisc 1.1.21 https://cran.r-project.org/package=IDPmisc
ids 1.0.1 https://cran.r-project.org/package=ids
igraph 2.1.4 https://cran.r-project.org/package=igraph
incidence 1.7.5 https://cran.r-project.org/package=incidence
infer 1.0.7 https://cran.r-project.org/package=infer
ini 0.3.1 https://cran.r-project.org/package=ini
inline 0.3.21 https://cran.r-project.org/package=inline
insight 1.1.0 https://cran.r-project.org/package=insight
interactions 1.2.0 https://cran.r-project.org/package=interactions
interp 1.1-6 https://cran.r-project.org/package=interp
ipred 0.9-15 https://cran.r-project.org/package=ipred
isoband 0.2.7 https://cran.r-project.org/package=isoband
iterators 1.0.14 https://cran.r-project.org/package=iterators
janitor 2.2.1 https://cran.r-project.org/package=janitor
jomo 2.7-6 https://cran.r-project.org/package=jomo
jpeg 0.1-10 https://cran.r-project.org/package=jpeg
jquerylib 0.1.4 https://cran.r-project.org/package=jquerylib
jsonlite 1.9.1 https://cran.r-project.org/package=jsonlite
jtools 2.3.0 https://cran.r-project.org/package=jtools
juicyjuice 0.1.0 https://cran.r-project.org/package=juicyjuice
kableExtra 1.4.0 https://cran.r-project.org/package=kableExtra
kernlab 0.9-33 https://cran.r-project.org/package=kernlab
KernSmooth 2.23-26 https://cran.r-project.org/package=KernSmooth
km.ci 0.5-6 https://cran.r-project.org/package=km.ci
KMsurv 0.1-5 https://cran.r-project.org/package=KMsurv
knitr 1.49 https://cran.r-project.org/package=knitr
ks 1.14.3 https://cran.r-project.org/package=ks
labeling 0.4.3 https://cran.r-project.org/package=labeling
labelled 2.14.0 https://cran.r-project.org/package=labelled
languageserver 0.3.16 https://cran.r-project.org/package=languageserver
later 1.4.1 https://cran.r-project.org/package=later
lattice 0.22-6 https://cran.r-project.org/package=lattice
latticeExtra 0.6-30 https://cran.r-project.org/package=latticeExtra
lava 1.8.1 https://cran.r-project.org/package=lava
lazyeval 0.2.2 https://cran.r-project.org/package=lazyeval
lcmm 2.2.1 https://cran.r-project.org/package=lcmm
lhs 1.2.0 https://cran.r-project.org/package=lhs
lifecycle 1.0.4 https://cran.r-project.org/package=lifecycle
lintr 3.2.0 https://cran.r-project.org/package=lintr
listenv 0.9.1 https://cran.r-project.org/package=listenv
lme4 1.1-36 https://cran.r-project.org/package=lme4
lmtest 0.9-40 https://cran.r-project.org/package=lmtest
lobstr 1.1.2 https://cran.r-project.org/package=lobstr
locfit 1.5-9.11 https://cran.r-project.org/package=locfit
loo 2.8.0 https://cran.r-project.org/package=loo
lpSolveAPI 5.5.2.0-17.12 https://cran.r-project.org/package=lpSolveAPI
lubridate 1.9.4 https://cran.r-project.org/package=lubridate
magick 2.8.5 https://cran.r-project.org/package=magick
magrittr 2.0.3 https://cran.r-project.org/package=magrittr
marginaleffects 0.25.0 https://cran.r-project.org/package=marginaleffects
markdown 1.13 https://cran.r-project.org/package=markdown
marqLevAlg 2.0.8 https://cran.r-project.org/package=marqLevAlg
MASS 7.3-65 https://cran.r-project.org/package=MASS
MatchIt 4.7.0 https://cran.r-project.org/package=MatchIt
mathjaxr 1.6-0 https://cran.r-project.org/package=mathjaxr
Matrix 1.7-2 https://cran.r-project.org/package=Matrix
MatrixModels 0.5-3 https://cran.r-project.org/package=MatrixModels
matrixStats 1.5.0 https://cran.r-project.org/package=matrixStats
maxstat 0.7-25 https://cran.r-project.org/package=maxstat
mclust 6.1.1 https://cran.r-project.org/package=mclust
medflex 0.6-10 https://cran.r-project.org/package=medflex
memoise 2.0.1 https://cran.r-project.org/package=memoise
metadat 1.4-0 https://cran.r-project.org/package=metadat
metafor 4.8-0 https://cran.r-project.org/package=metafor
mets 1.3.5 https://cran.r-project.org/package=mets
mgcv 1.9-1 https://cran.r-project.org/package=mgcv
mice 3.17.0 https://cran.r-project.org/package=mice
microbenchmark 1.5.0 https://cran.r-project.org/package=microbenchmark
mime 0.12 https://cran.r-project.org/package=mime
minqa 1.2.8 https://cran.r-project.org/package=minqa
mitml 0.4-5 https://cran.r-project.org/package=mitml
mitools 2.4 https://cran.r-project.org/package=mitools
mlogit 1.1-1 https://cran.r-project.org/package=mlogit
modeldata 1.4.0 https://cran.r-project.org/package=modeldata
modelenv 0.2.0 https://cran.r-project.org/package=modelenv
ModelMetrics 1.2.2.2 https://cran.r-project.org/package=ModelMetrics
modelr 0.1.11 https://cran.r-project.org/package=modelr
modelsummary 2.3.0 https://cran.r-project.org/package=modelsummary
modeltools 0.2-23 https://cran.r-project.org/package=modeltools
msm 1.8.2 https://cran.r-project.org/package=msm
mstate 0.3.3 https://cran.r-project.org/package=mstate
muhaz 1.2.6.4 https://cran.r-project.org/package=muhaz
multcomp 1.4-28 https://cran.r-project.org/package=multcomp
multicool 1.0.1 https://cran.r-project.org/package=multicool
munsell 0.5.1 https://cran.r-project.org/package=munsell
mvtnorm 1.3-3 https://cran.r-project.org/package=mvtnorm
naniar 1.1.0 https://cran.r-project.org/package=naniar
NHPoisson 3.3 https://cran.r-project.org/package=NHPoisson
nleqslv 3.3.5 https://cran.r-project.org/package=nleqslv
nlme 3.1-167 https://cran.r-project.org/package=nlme
nloptr 2.1.1 https://cran.r-project.org/package=nloptr
nnet 7.3-20 https://cran.r-project.org/package=nnet
norm 1.0-11.1 https://cran.r-project.org/package=norm
numDeriv 2016.8-1.1 https://cran.r-project.org/package=numDeriv
openssl 2.3.2 https://cran.r-project.org/package=openssl
operator.tools 1.6.3 https://cran.r-project.org/package=operator.tools
optparse 1.7.5 https://cran.r-project.org/package=optparse
ordinal 2023.12-4.1 https://cran.r-project.org/package=ordinal
padr 0.6.3 https://cran.r-project.org/package=padr
pammtools 0.5.93 https://cran.r-project.org/package=pammtools
pan 1.9 https://cran.r-project.org/package=pan
pander 0.6.6 https://cran.r-project.org/package=pander
parallelly 1.42.0 https://cran.r-project.org/package=parallelly
parameters 0.24.2 https://cran.r-project.org/package=parameters
parglm 0.1.7 https://cran.r-project.org/package=parglm
parsnip 1.3.0 https://cran.r-project.org/package=parsnip
patchwork 1.3.0 https://cran.r-project.org/package=patchwork
pbapply 1.7-2 https://cran.r-project.org/package=pbapply
pbkrtest 0.5.3 https://cran.r-project.org/package=pbkrtest
pcaPP 2.0-5 https://cran.r-project.org/package=pcaPP
pch 2.1 https://cran.r-project.org/package=pch
pec 2023.04.12 https://cran.r-project.org/package=pec
performance 0.13.0 https://cran.r-project.org/package=performance
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permute 0.9-7 https://cran.r-project.org/package=permute
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