From 30fc019c90ccd2934484688e93f333fb6fdbebba Mon Sep 17 00:00:00 2001 From: David Evans Date: Fri, 22 Sep 2023 16:32:04 +0100 Subject: [PATCH] Add `DiagrammeR` package https://cran.r-project.org/web/packages/DiagrammeR/ Note that this involved updating several other packages as well. @wjchulme has confirmed that these updates seem reasonable. Closes #148 --- packages.csv | 29 +++++---- renv.lock | 165 +++++++++++++++++++++++++++++++++++++++------------ 2 files changed, 145 insertions(+), 49 deletions(-) diff --git a/packages.csv b/packages.csv index f1b3456..9cae014 100644 --- a/packages.csv +++ b/packages.csv @@ -52,7 +52,7 @@ "corrplot","0.84" "cowplot","1.0.0" "coxme","2.2-16" -"cpp11","0.2.7" +"cpp11","0.4.6" "crayon","1.3.4" "credentials","1.3.0" "crosstalk","1.1.0.1" @@ -66,10 +66,12 @@ "detectseparation","0.2" "dfidx","0.0-4" "DHARMa","0.4.6" +"DiagrammeR","1.0.10" "digest","0.6.25" "distributional","0.2.0" "doParallel","1.0.15" -"dplyr","1.0.2" +"downloader","0.4" +"dplyr","1.1.3" "DT","0.15" "dtplyr","1.0.1" "dtw","1.23-1" @@ -94,7 +96,7 @@ "fansi","0.4.1" "farver","2.0.3" "fastDummies","1.6.3" -"fastmap","1.0.1" +"fastmap","1.1.1" "fastshap","0.0.7" "fda","5.1.7" "fds","1.8" @@ -143,7 +145,7 @@ "gitcreds","0.1.1" "glmnet","4.1-4" "globals","0.12.5" -"glue","1.4.2" +"glue","1.6.2" "Gmisc","2.0.1" "gmm","1.8" "gnm","1.1-1" @@ -163,12 +165,12 @@ "Hmisc","4.4-1" "hms","0.5.3" "htmlTable","2.0.1" -"htmltools","0.5.0" +"htmltools","0.5.6" "htmlwidgets","1.5.1" "httpuv","1.5.4" "httr","1.4.2" "IDPmisc","1.1.20" -"igraph","1.2.5" +"igraph","1.5.1" "incidence","1.7.3" "ini","0.3.1" "inline","0.3.15" @@ -264,7 +266,7 @@ "pec","2021.10.11" "performance","0.7.0" "PHEindicatormethods","1.3.2" -"pillar","1.4.6" +"pillar","1.9.0" "pkgbuild","1.1.0" "pkgconfig","2.0.3" "pkgload","1.1.0" @@ -315,7 +317,7 @@ "RCurl","1.98-1.2" "Rdpack","2.1.1" "rdrobust","2.1.1" -"readr","1.3.1" +"readr","2.1.4" "readxl","1.3.1" "recipes","0.1.15" "registry","0.5-1" @@ -386,10 +388,10 @@ "testthat","2.3.2" "TH.data","1.1-0" "threejs","0.3.3" -"tibble","3.0.3" +"tibble","3.2.1" "tictoc","1.0" "tidyr","1.1.2" -"tidyselect","1.1.0" +"tidyselect","1.2.0" "tidyverse","1.3.0" "timeDate","3043.102" "timereg","2.0.1" @@ -397,6 +399,7 @@ "tmvtnorm","1.5" "tsModel","0.6" "twopartm","0.1.0" +"tzdb","0.4.0" "units","0.6-7" "UpSetR","1.4.0" "usethis","2.0.1" @@ -405,9 +408,11 @@ "vcd","1.4-9" "vctrs","0.6.2" "VGAM","1.1-6" -"viridis","0.5.1" -"viridisLite","0.3.0" +"viridis","0.6.4" +"viridisLite","0.4.2" "visdat","0.5.3" +"visNetwork","2.1.2" +"vroom","1.6.3" "webshot","0.5.2" "WeightIt","0.13.1" "whisker","0.4" diff --git a/renv.lock b/renv.lock index 1f92269..39760af 100644 --- a/renv.lock +++ b/renv.lock @@ -86,6 +86,33 @@ "promises" ] }, + "DiagrammeR": { + "Package": "DiagrammeR", + "Version": "1.0.10", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "f3de4a4878163a4629a528bbcc6e655d", + "Requirements": [ + "RColorBrewer", + "downloader", + "dplyr", + "glue", + "htmltools", + "htmlwidgets", + "igraph", + "magrittr", + "purrr", + "readr", + "rlang", + "rstudioapi", + "scales", + "stringr", + "tibble", + "tidyr", + "viridis", + "visNetwork" + ] + }, "Epi": { "Package": "Epi", "Version": "2.46", @@ -1158,10 +1185,10 @@ }, "cpp11": { "Package": "cpp11", - "Version": "0.2.7", + "Version": "0.4.6", "Source": "Repository", "Repository": "CRAN", - "Hash": "730eebcc741a5c36761f7d4d0f5e37b8", + "Hash": "707fae4bbf73697ec8d85f9d7076c061", "Requirements": [] }, "crayon": { @@ -1327,19 +1354,30 @@ "iterators" ] }, + "downloader": { + "Package": "downloader", + "Version": "0.4", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "f4f2a915e0dedbdf016a83b63477349f", + "Requirements": [ + "digest" + ] + }, "dplyr": { "Package": "dplyr", - "Version": "1.0.2", + "Version": "1.1.3", "Source": "Repository", "Repository": "CRAN", - "Hash": "d0509913b27ea898189ee664b6030dc2", + "Hash": "e85ffbebaad5f70e1a2e2ef4302b4949", "Requirements": [ "R6", - "ellipsis", + "cli", "generics", "glue", "lifecycle", "magrittr", + "pillar", "rlang", "tibble", "tidyselect", @@ -1591,10 +1629,10 @@ }, "fastmap": { "Package": "fastmap", - "Version": "1.0.1", + "Version": "1.1.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "83ab58a0518afe3d17e41da01af13b60", + "Hash": "f7736a18de97dea803bde0a2daaafb27", "Requirements": [] }, "fastshap": { @@ -2174,10 +2212,10 @@ }, "glue": { "Package": "glue", - "Version": "1.4.2", + "Version": "1.6.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "6efd734b14c6471cfe443345f3e35e29", + "Hash": "4f2596dfb05dac67b9dc558e5c6fba2e", "Requirements": [] }, "gmm": { @@ -2392,13 +2430,15 @@ }, "htmltools": { "Package": "htmltools", - "Version": "0.5.0", + "Version": "0.5.6", "Source": "Repository", "Repository": "CRAN", - "Hash": "7d651b7131794fe007b1ad6f21aaa401", + "Hash": "a2326a66919a3311f7fbb1e3bf568283", "Requirements": [ "base64enc", "digest", + "ellipsis", + "fastmap", "rlang" ] }, @@ -2444,14 +2484,18 @@ }, "igraph": { "Package": "igraph", - "Version": "1.2.5", + "Version": "1.5.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "3878c30ce67cdb7f2d7f72554e37f476", + "Hash": "80401cb5ec513e8ddc56764d03f63669", "Requirements": [ "Matrix", + "cli", + "cpp11", + "lifecycle", "magrittr", - "pkgconfig" + "pkgconfig", + "rlang" ] }, "incidence": { @@ -3468,15 +3512,14 @@ }, "pillar": { "Package": "pillar", - "Version": "1.4.6", + "Version": "1.9.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "bdf26e55ccb7df3e49a490150277f002", + "Hash": "15da5a8412f317beeee6175fbc76f4bb", "Requirements": [ "cli", - "crayon", - "ellipsis", "fansi", + "glue", "lifecycle", "rlang", "utf8", @@ -3862,18 +3905,22 @@ }, "readr": { "Package": "readr", - "Version": "1.3.1", + "Version": "2.1.4", "Source": "Repository", "Repository": "CRAN", - "Hash": "af8ab99cd936773a148963905736907b", + "Hash": "b5047343b3825f37ad9d3b5d89aa1078", "Requirements": [ - "BH", "R6", - "Rcpp", + "cli", "clipr", + "cpp11", "crayon", "hms", - "tibble" + "lifecycle", + "rlang", + "tibble", + "tzdb", + "vroom" ] }, "readxl": { @@ -4687,14 +4734,11 @@ }, "tibble": { "Package": "tibble", - "Version": "3.0.3", + "Version": "3.2.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "08bd36bd34b20d4f7971d49e81deaab0", + "Hash": "a84e2cc86d07289b3b6f5069df7a004c", "Requirements": [ - "cli", - "crayon", - "ellipsis", "fansi", "lifecycle", "magrittr", @@ -4734,16 +4778,17 @@ }, "tidyselect": { "Package": "tidyselect", - "Version": "1.1.0", + "Version": "1.2.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "6ea435c354e8448819627cf686f66e0a", + "Hash": "79540e5fcd9e0435af547d885f184fd5", "Requirements": [ - "ellipsis", + "cli", "glue", - "purrr", + "lifecycle", "rlang", - "vctrs" + "vctrs", + "withr" ] }, "tidyverse": { @@ -4842,6 +4887,16 @@ "data.table" ] }, + "tzdb": { + "Package": "tzdb", + "Version": "0.4.0", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "f561504ec2897f4d46f0c7657e488ae1", + "Requirements": [ + "cpp11" + ] + }, "units": { "Package": "units", "Version": "0.6-7", @@ -4915,10 +4970,10 @@ }, "viridis": { "Package": "viridis", - "Version": "0.5.1", + "Version": "0.6.4", "Source": "Repository", "Repository": "CRAN", - "Hash": "6f6b49e5b3b5ee5a6d0c28bf1b4b9eb3", + "Hash": "80cd127bc8c9d3d9f0904ead9a9102f1", "Requirements": [ "ggplot2", "gridExtra", @@ -4927,12 +4982,25 @@ }, "viridisLite": { "Package": "viridisLite", - "Version": "0.3.0", + "Version": "0.4.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "ce4f6271baa94776db692f1cb2055bee", + "Hash": "c826c7c4241b6fc89ff55aaea3fa7491", "Requirements": [] }, + "visNetwork": { + "Package": "visNetwork", + "Version": "2.1.2", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "3e48b097e8d9a91ecced2ed4817a678d", + "Requirements": [ + "htmltools", + "htmlwidgets", + "jsonlite", + "magrittr" + ] + }, "visdat": { "Package": "visdat", "Version": "0.5.3", @@ -4950,6 +5018,29 @@ "tidyr" ] }, + "vroom": { + "Package": "vroom", + "Version": "1.6.3", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "8318e64ffb3a70e652494017ec455561", + "Requirements": [ + "bit64", + "cli", + "cpp11", + "crayon", + "glue", + "hms", + "lifecycle", + "progress", + "rlang", + "tibble", + "tidyselect", + "tzdb", + "vctrs", + "withr" + ] + }, "webshot": { "Package": "webshot", "Version": "0.5.2",