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specifier = "<=7.14.3" }, - { name = "docker", specifier = "<=7.1.0" }, - { name = "pre-commit", specifier = "<=4.6.0" }, + { name = "coverage", specifier = "<=7.15.2" }, + { name = "docker", specifier = "<=7.2.0" }, + { name = "pre-commit", specifier = "<=4.6.1" }, { name = "pytest", specifier = "<=9.1.1" }, - { name = "ruff", specifier = "<=0.15.13" }, + { name = "ruff", specifier = "<=0.16.0" }, ] [[package]] From bc0ee2aeffb31dcd3f2c0edb8dd4259c8ab037e4 Mon Sep 17 00:00:00 2001 From: opensafely-github-bot Date: Mon, 3 Aug 2026 07:00:26 +0000 Subject: [PATCH 2/6] Update uvmirror file --- requirements.uvmirror | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/requirements.uvmirror b/requirements.uvmirror index 7e8647e..be11632 100644 --- a/requirements.uvmirror +++ b/requirements.uvmirror @@ -8,10 +8,10 @@ charset-normalizer==3.4.9 # via requests colorama==0.4.6 ; sys_platform == 'win32' # via pytest -coverage==7.14.3 +coverage==7.15.2 distlib==0.4.3 # via virtualenv -docker==7.1.0 +docker==7.2.0 filelock==3.29.7 # via # python-discovery @@ -32,7 +32,7 @@ platformdirs==4.10.0 # virtualenv pluggy==1.6.0 # via pytest -pre-commit==4.6.0 +pre-commit==4.6.1 pygments==2.20.0 # via pytest pymssql==2.3.13 @@ -46,7 +46,7 @@ pyyaml==6.0.3 # via pre-commit requests==2.34.2 # via docker -ruff==0.15.13 +ruff==0.16.0 sqlglot==30.12.0 # via sqlrunner structlog==26.1.0 From 6b263cf563a797765eb90387b1a269c3b7ef0ee1 Mon Sep 17 00:00:00 2001 From: Alice Wong Date: Mon, 3 Aug 2026 08:24:18 +0100 Subject: [PATCH 3/6] Add `noqa: SIM103` for t1oo logic The existing code is more readable than what SIM103 suggests. https://docs.astral.sh/ruff/rules/needless-bool/ --- sqlrunner/main.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sqlrunner/main.py b/sqlrunner/main.py index 447994e..96692ec 100644 --- a/sqlrunner/main.py +++ b/sqlrunner/main.py @@ -63,7 +63,7 @@ def are_t1oos_handled(sql_query): # The word boundary (\b) is necessary because PatientsWithTypeOneDissent # is a substring of AllowedPatientsWithTypeOneDissent. return True - if re.search(f"--.*{OLD_T1OOS_TABLE}", sql_query): + if re.search(f"--.*{OLD_T1OOS_TABLE}", sql_query): # noqa: SIM103 # If OLD_T1OOS_TABLE is referenced in a comment in the query, then the query # is safe to run. (It would be unnecessary faff to change existing queries # that reference the old table namein a comment to explain why T1OO data From b9a8a24f514040d73ef2561dba5f850ee304ccd0 Mon Sep 17 00:00:00 2001 From: Alice Wong Date: Mon, 3 Aug 2026 08:25:03 +0100 Subject: [PATCH 4/6] Ensure context handler is used when opening files This satisfies ruff's SIM115 rule. In the cases where we already use a context handler but ruff doesn't recognise it, ignore the rule. https://docs.astral.sh/ruff/rules/open-file-with-context-handler/ --- sqlrunner/main.py | 8 ++++---- tests/test_main.py | 3 ++- 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/sqlrunner/main.py b/sqlrunner/main.py index 96692ec..e830683 100644 --- a/sqlrunner/main.py +++ b/sqlrunner/main.py @@ -115,9 +115,9 @@ def write_results(results, f_path): if f_path is not None: kwargs = {"newline": "", "encoding": "utf-8"} if f_path.suffixes == [".csv", ".gz"]: - context = gzip.open(f_path, "wt", compresslevel=6, **kwargs) + context = gzip.open(f_path, "wt", compresslevel=6, **kwargs) # noqa: SIM115 else: - context = open(f_path, "w", **kwargs) + context = open(f_path, "w", **kwargs) # noqa: SIM115 else: context = contextlib.nullcontext(sys.stdout) @@ -132,9 +132,9 @@ def write_results(results, f_path): def read_dummy_data_file(f_path): kwargs = {"newline": "", "encoding": "utf-8"} if f_path.suffixes == [".csv", ".gz"]: - context = gzip.open(f_path, "rt", **kwargs) + context = gzip.open(f_path, "rt", **kwargs) # noqa: SIM115 else: - context = open(f_path, **kwargs) + context = open(f_path, **kwargs) # noqa: SIM115 with context as f: yield from csv.DictReader(f) diff --git a/tests/test_main.py b/tests/test_main.py index cdd983c..1b331df 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -131,7 +131,8 @@ def test_write_results_compressed(output_path): f_path = output_path / "results.csv.gz" results = [{"id": 1}, {"id": 2}] main.write_results(iter(results), f_path) - assert gzip.open(f_path, "rt").read() == "id\n1\n2\n" + with gzip.open(f_path, "rt") as f: + assert f.read() == "id\n1\n2\n" @pytest.mark.parametrize( From 96065fe760e1dd9acd77aa361b2d09443e725646 Mon Sep 17 00:00:00 2001 From: Alice Wong Date: Mon, 3 Aug 2026 08:31:55 +0100 Subject: [PATCH 5/6] Prefer `next(iter(...))` over single element slice This satisfies ruff's `RUF015` rule. While creating a list won't actually be that expensive here, the lazy code that ruff wants is quite readable anyway and there is no harm using it. --- tests/docker.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/docker.py b/tests/docker.py index 0835770..b573e59 100644 --- a/tests/docker.py +++ b/tests/docker.py @@ -27,7 +27,7 @@ def get_mapped_port_for_host(self, name, container_port): def get_container_ip(self, name): container = self.get_container(name) networks = container.attrs["NetworkSettings"]["Networks"].values() - return list(networks)[0]["IPAddress"] + return next(iter(networks))["IPAddress"] def run_bg(self, name, image, **kwargs): # pragma: no cover return self._run(name=name, image=image, detach=True, **kwargs) From cd4720bf3261c3ca9ab697fd7c37e862b9d3572f Mon Sep 17 00:00:00 2001 From: Alice Wong Date: Mon, 3 Aug 2026 08:33:13 +0100 Subject: [PATCH 6/6] Add `noqa: TRY002` for timeout error Ruff's `TRY002` rule wants us to define our own exception classes instead of raising the built-in `Exception` directly. Here we deliberately want a generic catch-all exception once the timeout is reached rather than a specific error type, so raising `Exception` directly is what we want. https://docs.astral.sh/ruff/rules/raise-vanilla-class/ Slack thread: https://bennettoxford.slack.com/archives/C069YDR4NCA/p1785744851283129?thread_ts=1785742987.074719&cid=C069YDR4NCA --- tests/databases.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/databases.py b/tests/databases.py index c20d69e..29cebbc 100644 --- a/tests/databases.py +++ b/tests/databases.py @@ -25,7 +25,7 @@ def wait_for_database(database, timeout=10): break except pymssql.OperationalError as e: # pragma: no cover if time.time() > limit: - raise Exception( + raise Exception( # noqa: TRY002 f"Failed to connect to database after {timeout} seconds" ) from e time.sleep(1)