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Missing LD data in 19.05.03 release #2361

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edm1 opened this issue Jun 26, 2019 · 3 comments
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Missing LD data in 19.05.03 release #2361

edm1 opened this issue Jun 26, 2019 · 3 comments
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Bug Something isn't working Genetics Portal Issues related to Open Targets Genetics Portal

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@edm1
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edm1 commented Jun 26, 2019

For a subset of studies, the study IDs on the top loci table and LD table do not match. This results in these studies being missing from the "intersection table" (they won't show up on the study page / locus plot / some tables on variant page).

No fix is needed but it requires the V2D pipelines to be re-run.

Given it is only a subset of studies, this is high but not critical priority. We should aim to do a minor release within the next few weeks.

@edm1 edm1 added Bug Something isn't working Priority: High labels Jun 26, 2019
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edm1 commented Jul 8, 2019

The new V2D files for a minor release are in staging here: gs://genetics-portal-staging/v2d/190705

@edm1
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edm1 commented Jul 17, 2019

The new V2D has been copied to gs://genetics-portal-data/v2d/190705, you can assume all files in that folder have been changed.

@mkarmona
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@edm1 the new image is being produced

@ktsirigos ktsirigos added the Genetics Portal Issues related to Open Targets Genetics Portal label Mar 24, 2022
@ktsirigos ktsirigos transferred this issue from opentargets-archive/genetics Mar 24, 2022
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Labels
Bug Something isn't working Genetics Portal Issues related to Open Targets Genetics Portal
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