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GTEx is down #725

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deniseOme opened this issue Aug 29, 2019 · 3 comments

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@deniseOme
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commented Aug 29, 2019

GTEx widget seems to be down e.g.

https://www.targetvalidation.org/target/ENSG00000145777
https://www.targetvalidation.org/target/ENSG00000198125

Both Chrome and Firefox.
Screen Shot 2019-08-29 at 10 04 29

Ed's pointed out they released a new version (GTEx v8) on 27th Aug. https://twitter.com/tuuliel/status/1166092633615339524

@peatroot has confirmed this "Calls like https://gtexportal.org/rest/v1/expression/geneExpression?gencodeId=ENSG00000091831.22 no longer have quantiles and outliers computed server side, they just pass all the data now."

Something to revisit for the rewrite @d0choa ?

@d0choa

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commented Aug 29, 2019

@mirandaio has been looking at updating our code to draw the boxplot with the new endpoint.

However, I found in the Swagger documentation that in the previous version there was a boxplotDetail parameter that could be tuned to get the full data, median or quartiles.

It just seems they missed this feature in the new version. Before spending more time on this, I would suggest that @deniseOme drop them a line and ask whether they are planning to include this in the gtex_v8 API

@mirandaio

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commented Aug 30, 2019

This function could be reused in the Angular app to transform the new data structure that is returned by the GTEx API to how the data was previously returned. https://github.com/opentargets/platform-app/pull/95/files#diff-be05d42e66ec54b698e1605fa9d1db38R9-R39

LucaFumis added a commit to opentargets/webapp that referenced this issue Sep 3, 2019
LucaFumis added a commit to opentargets/webapp that referenced this issue Sep 3, 2019
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commented Sep 3, 2019

Fixed version is live in production.

@d0choa d0choa closed this Sep 3, 2019

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