Join GitHub today
GitHub is home to over 40 million developers working together to host and review code, manage projects, and build software together.Sign up
GTEx is down #725
GTEx widget seems to be down e.g.
Ed's pointed out they released a new version (GTEx v8) on 27th Aug. https://twitter.com/tuuliel/status/1166092633615339524
@peatroot has confirmed this "Calls like https://gtexportal.org/rest/v1/expression/geneExpression?gencodeId=ENSG00000091831.22 no longer have quantiles and outliers computed server side, they just pass all the data now."
Something to revisit for the rewrite @d0choa ?
@mirandaio has been looking at updating our code to draw the boxplot with the new endpoint.
However, I found in the Swagger documentation that in the previous version there was a
It just seems they missed this feature in the new version. Before spending more time on this, I would suggest that @deniseOme drop them a line and ask whether they are planning to include this in the
This function could be reused in the Angular app to transform the new data structure that is returned by the GTEx API to how the data was previously returned. https://github.com/opentargets/platform-app/pull/95/files#diff-be05d42e66ec54b698e1605fa9d1db38R9-R39