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The evidence_codes_info field was missing from the genetics portal evidences as the new source was not introduced into the ECO json file. The variant to gene mapping pipeline represents a new evidence class.
A relatively straightforward resolution is to add the following line to the open_targets_terms dictionary: 'http://identifiers.org/eco/locus_to_gene_pipeline':'Open Targets Genetics portal locus to gene annotation pipeline,
This will lead to the addition of the following evidence class:
{
"code": "http://identifiers.org/eco/locus_to_gene_pipeline",
"label": "Open Targets Genetics portal locus to gene annotation pipeline",
"path": [
{
"label": "evidence",
"uri": "http://purl.obolibrary.org/obo/ECO_0000000"
},
{
"label": "Open Targets Genetics portal locus to gene annotation pipeline",
"uri": "http://identifiers.org/eco/locus_to_gene_pipeline"
}
],
"path_codes": [
"ECO_0000000",
"locus_to_gene_pipeline"
],
"path_labels": [
"evidence",
"Open Targets Genetics portal locus to gene annotation pipeline"
]
}
The text was updated successfully, but these errors were encountered:
This ticket is related to #856
The
evidence_codes_info
field was missing from the genetics portal evidences as the new source was not introduced into the ECO json file. The variant to gene mapping pipeline represents a new evidence class.Affected repository: ECO ontology generation
A relatively straightforward resolution is to add the following line to the open_targets_terms dictionary:
'http://identifiers.org/eco/locus_to_gene_pipeline':'Open Targets Genetics portal locus to gene annotation pipeline,
This will lead to the addition of the following evidence class:
The text was updated successfully, but these errors were encountered: