Pinned repositories

  1. opentree

    Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.

    JavaScript 83 14

  2. reference-taxonomy

    Open Tree Reference Taxonomy (OTT) tools

    Python 5 11

  3. propinquity

    make-based supertree pipeline

    Python 2 1

  4. treemachine

    Source tree graph database

    Java 17 5

  5. phylesystem

    phylogenetic study document storage used by Open Tree of Life

    Python 17 5

  6. peyotl

    python library for interacting with Open Tree of Life resources

    Jupyter Notebook 11 6

  • Shell BSD-2-Clause Updated Oct 19, 2018
  • python library for interacting with Open Tree of Life resources

    Jupyter Notebook 11 6 BSD-2-Clause Updated Oct 16, 2018
  • OpenTree Web-Services Wrapper

    Python Updated Oct 16, 2018
  • doc store for the Open Tree of Life study curation API

    1 1 Updated Oct 16, 2018
  • opentree index using postgres and pyramid

    Python BSD-2-Clause Updated Oct 16, 2018
  • Tree collections

    2 Updated Oct 11, 2018
  • miscellaneous scripts and data for concerns that span more than one of the Open Tree code repositories: integration tests, system statistics, etc.

    Shell 12 3 BSD-2-Clause Updated Sep 24, 2018
  • Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.

    JavaScript 83 14 BSD-2-Clause Updated Sep 24, 2018
  • A collection of current (and past) server configuration files for opentree components

    Python 1 BSD-2-Clause Updated Sep 11, 2018
  • Organization page with description of repositories:

    CSS 4 1 BSD-2-Clause Updated Sep 10, 2018
  • ansible playbook for installation of OpenTree otindex

    1 BSD-2-Clause Updated Sep 6, 2018
  • Yet another testing repository. This one is full size for performance testing. But still temporary.

    2 3 Updated Aug 29, 2018
  • standalone test of web services

    Python BSD-2-Clause Updated Aug 10, 2018
  • Production data for taxonomic amendments API (peyotl)

    1 1 Updated Aug 9, 2018
  • API access to Open Tree of Life treestore

    Python 7 3 BSD-2-Clause Updated Aug 1, 2018
  • taxonomy graphdb

    Java 7 3 Updated Jul 10, 2018
  • Open Tree Reference Taxonomy (OTT) tools

    Python 5 11 BSD-2-Clause Updated Jun 19, 2018
  • Test data for taxonomic amendments API (peyotl)

    2 BSD-2-Clause Updated May 24, 2018
  • Generate repeatable, data-driven, publication quality figures of trees.

    Jupyter Notebook 7 3 BSD-2-Clause 1 issue needs help Updated Apr 13, 2018
  • C++14 lib for parsing of trees from newick, nexson, and taxonomy.tsv formats; tree calculations and manipulations

    C++ 3 3 Updated Mar 5, 2018
  • Test data repository for Tree Illustrator

    BSD-2-Clause Updated Oct 18, 2017
  • Collections of trees from the OpenTree datastore.

    2 BSD-2-Clause Updated Oct 14, 2017
  • Python bindings for OpenTree services

    Python 2 1 Updated Aug 25, 2017
  • Workshop/hackathon for interoperability across tree viewers

    1 2 Updated Jun 27, 2017
  • Python Updated May 11, 2017
  • make-based supertree pipeline

    Python 2 1 BSD-2-Clause Updated May 5, 2017
  • Static content related to the project; the webroot for the files.opentreeoflife.org web site. The repo contains all of the smallish files: indexes, READMEs, and so on. Larger files such as taxonomies and synthetic trees on the web site but not in git.

    HTML 1 Updated Mar 9, 2017
  • indexing service for the OpenTreeOfLife nexson repository

    Java Updated Oct 31, 2016
  • Source tree graph database

    Java 17 5 Updated Oct 23, 2016
  • OpenTree / FuturePhy workshops

    1 4 Updated Oct 22, 2016