@openworm

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.

Pinned repositories

  1. org.geppetto

    Geppetto - An open platform for life sciences data exploration, visualization and simulation

    Python 119 41

  2. sibernetic

    This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics simulations related features applied to C. elegans locomotion

    C 126 72

  3. PyOpenWorm

    Unified, simple data access python library for data & facts about C. elegans anatomy

    Python 59 33

  4. wormbrowser

    The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans

    JavaScript 29 9

  5. open-worm-analysis-toolbox

    A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

    Python 15 18

  6. ChannelWorm

    A repository to integrate data, information, scripts, and models of ion channels in C. elegans

    JavaScript 7 8

  • Geppetto frontend bundle (Web Application)

    JavaScript 20 24 Updated Jan 23, 2017
  • Geppetto Jupyter Notebook Extension

    Python 2 Updated Jan 23, 2017
  • Generic simulation bundle for Geppetto

    Java 6 13 Updated Jan 23, 2017
  • Java 1 Updated Jan 21, 2017
  • NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302

    XSLT 75 44 Updated Jan 19, 2017
  • Java 2 Updated Jan 19, 2017
  • Geppetto core bundle

    Java 23 15 Updated Jan 19, 2017
  • NeuroML Model Bundle for Geppetto

    Java 8 13 Updated Jan 19, 2017
  • C. elegans pharyngeal muscle cell (pm3) model, capable of generating Ca2+ slow action potential (NEURON, NMODL).

    C Updated Jan 19, 2017
  • Java 4 Updated Jan 18, 2017
  • Persistance bundle for Geppetto

    Java 1 Updated Jan 18, 2017
  • Movement Analysis on the cloud

    Python 1 1 Updated Jan 13, 2017
  • OpenWorm Website

    HTML 4 13 Updated Jan 10, 2017
  • Geppetto Node.js backend

    JavaScript Updated Jan 8, 2017
  • Java 1 Updated Jan 8, 2017
  • SWC Model Interpreter for Geppetto

    Java 1 4 Updated Jan 8, 2017
  • Geppetto bundle to add support for external neuronal simulators (NEURON, etc.)

    Python 1 Updated Jan 8, 2017
  • Geppetto - An open platform for life sciences data exploration, visualization and simulation

    Python 119 40 Updated Jan 8, 2017
  • Minimalist Python code -- based on OpenWorm and the published literature -- for modeling C. elegans neural network dynamics

    Jupyter Notebook 4 Updated Dec 22, 2016
  • This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics simulations related features applied to C. elegans locomotion

    C 126 72 Updated Dec 22, 2016
  • Neuromechanical model of C. Elegans

    C++ 17 6 Updated Dec 19, 2016
  • Conversion script to bring neuron models drawn in Blender into NeuroML format

    Python 4 2 Updated Dec 19, 2016
  • Tools to produce, analyse and compare both simulated and recorded neuronal datasets

    Jupyter Notebook 1 3 Updated Dec 19, 2016
  • Project Home repo for OpenWorm Wiki and Project-wide issues

    JavaScript 580 75 Updated Dec 19, 2016
  • C. elegans simulator

    C 1 2 Updated Dec 19, 2016
  • Interface between Sibernetic and NEURON simulator

    Python 4 1 Updated Dec 19, 2016
  • Transforms Sibernetic output into a COLLADA animation

    C++ 3 1 Updated Dec 19, 2016
  • Generates starting scene configuration for the Sibernetic simulation engine

    Python 3 4 Updated Dec 19, 2016
  • A repository to integrate data, information, scripts, and models of ion channels in C. elegans

    JavaScript 7 8 Updated Dec 16, 2016
  • A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

    Python 15 17 Updated Nov 22, 2016