@openworm

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.

Pinned repositories

  1. OpenWorm

    Project Home repo for Central Dockerfile and Project-wide issues

    Python 768 98

  2. sibernetic

    This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion

    C 192 91

  3. org.geppetto

    Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.

    Python 160 46

  4. open-worm-analysis-toolbox

    A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

    Python 28 18

  5. ChannelWorm2

    Tools and curated datasets to build quantitative models of C. elegans ion channels

    Jupyter Notebook 2

  6. c302

    The c302 framework has been moved here from https://github.com/openworm/CElegansNeuroML/tree/master/CElegans/pythonScripts/c302

    Python 2 5

  • Updated Sep 23, 2018
  • Unified, simple data access python library for data & facts about C. elegans anatomy

    Python 103 46 MIT 4 issues need help Updated Sep 23, 2018
  • Geppetto frontend bundle (Web Application)

    JavaScript 25 25 Updated Sep 23, 2018
  • Geppetto Jupyter Notebook Extension

    Python 2 3 Updated Sep 18, 2018
  • Tools and curated datasets to build quantitative models of C. elegans ion channels

    Jupyter Notebook 2 Updated Sep 16, 2018
  • A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

    Python 28 18 2 issues need help Updated Sep 14, 2018
  • Java 3 Updated Sep 10, 2018
  • Persistance bundle for Geppetto

    Java 1 Updated Sep 10, 2018
  • Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.

    Python 160 46 Updated Sep 10, 2018
  • C. elegans robots

    C 7 5 Updated Sep 8, 2018
  • This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion

    C 192 91 Updated Sep 8, 2018
  • Python Library to create, load, edit and save a Geppetto Model

    Python 6 2 Updated Sep 7, 2018
  • Geppetto core bundle

    Java 22 13 Updated Sep 7, 2018
  • Repository to host Geppetto documentation

    Python 2 9 Updated Sep 4, 2018
  • Java 1 Updated Sep 4, 2018
  • SWC Model Interpreter for Geppetto

    Java 1 3 Updated Sep 4, 2018
  • Geppetto bundle to add support for external neuronal simulators (NEURON, etc.)

    Python Updated Sep 4, 2018
  • NeuroML Model Bundle for Geppetto

    Java 8 11 Updated Sep 4, 2018
  • Java 1 Updated Sep 4, 2018
  • Generic simulation bundle for Geppetto

    Java 7 11 Updated Sep 4, 2018
  • Java 2 Updated Sep 4, 2018
  • Movement Analysis on the cloud

    Python 3 3 3 issues need help Updated Aug 30, 2018
  • Python 2 5 1 issue needs help Updated Aug 30, 2018
  • ChannelWorm Archived

    Tools and curated datasets to build quantitative models of C. elegans ion channels

    JavaScript 11 10 MIT Updated Aug 27, 2018
  • Project Home repo for Central Dockerfile and Project-wide issues

    Python 768 98 Updated Aug 9, 2018
  • Documentation for OpenWorm

    Python 38 25 Updated Jul 24, 2018
  • Model Completion Dashboard

    JavaScript 7 Updated Jul 8, 2018
  • OpenWorm Website

    HTML 6 22 Updated Jul 4, 2018
  • RDFLib Store backed by ZODB

    Python 6 Updated Jun 24, 2018
  • OpenWorm tests across various repos

    Jupyter Notebook 1 3 MIT Updated Jun 3, 2018