Geppetto Release 0.3.3

@tarelli tarelli released this Dec 19, 2016

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Install Instructions | Documentation | Live deployment

New in release 0.3.3-alpha:

Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see instructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.

† The Jupyter notebook extension and the and Node.js bundle are experimental mocked backends the frontend can connect to.

Part of the work in this release was supported by:

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Geppetto Release 0.3.2

@tarelli tarelli released this Oct 26, 2016 · 12 commits to master since this release

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Install Instructions | Documentation | Live deployment

New in release 0.3.2-alpha:

Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see instructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.

† The Jupyter notebook extension and the and Node.js bundle are experimental mocked backends the frontend can connect to.

Part of the work in this release was supported by:

Downloads

Geppetto Release 0.3.1

@tarelli tarelli released this Aug 17, 2016 · 19 commits to master since this release

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Install Instructions | Documentation | Live deployment

New in release 0.3.1-alpha:

  • Performance improvements loading projects (@tarelli)
  • Components refactoring (@adrianq, @gidili)
  • Connectivy widget configuration improvements (@borismarin, @tarelli)
  • Created docker images to setup Geppetto and Eclipse development environment (@slars0n)
  • Widgets inline help (@borismarin)
  • Lazy loading of NeuroML projections (@tarelli)
  • Clone experiment functionality (@jrmartin)
  • Added form widget component (@adrianq)
  • Added support to spotlight to interface with external data sources (@jrmartin)

Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see instructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.

Part of the work in this release was supported by Virtual Fly Brain and Open Source Brain through multiple Wellcome Trust grants.

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Geppetto Release 0.3.0

@tarelli tarelli released this Jun 9, 2016 · 85 commits to master since this release

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Install Instructions | Documentation | Live deployment

New in release 0.3.0-alpha:

Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see instructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.

Part of the work in this release was supported by Virtual Fly Brain and Open Source Brain through multiple Wellcome Trust grants.

Downloads

Geppetto Release 0.2.9

@tarelli tarelli released this Apr 11, 2016 · 106 commits to master since this release

Geppetto logo

Install Instructions | Documentation | Live deployment

New in release 0.2.9-alpha:

Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see instructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.

Part of the work in this release was supported by Open Source Brain and Virtual Fly Brain through multiple Wellcome Trust grants.

Downloads

Geppetto Release 0.2.8

@tarelli tarelli released this Feb 17, 2016 · 113 commits to master since this release

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Install Instructions | Documentation | Live deployment

New in release 0.2.8-alpha:

  • New ecore based Geppetto model abstraction including types, instances and arrays (@tarelli) Hero
  • Backend refactoring introducing types, instances and arrays (@tarelli) Hero
  • Frontend refactoring introducing types, instances and arrays (@gidili, @tarelli) Hero
  • NeuroML model interpreter rewrite to use types, instances and arrays (@adrianq) Hero
  • Multi-compartment neuronal simulations improvements (@adrianq)
  • Multi-compartment neuronal simulations lighting up (@adrianq)
  • Added support for database user groups (@gidili)
  • Added support for UI workflows (@gidili, @tarelli)
  • Refactored Tree visualiser widget, performance improvement, UI model, lazy loading (@adrianq)
  • Added Lightspeed search (@tarelli) Hero
  • Improved Chord plot, connectivity widget refactoring (@borismarin)
  • Refactored Plotting widget, performance improvement, added support for value reading (@tarelli)
  • Added support for cloud point visualisation for vertex only OBJs (@tarelli)
  • QUnit tests update (@gidili)
  • Integration tests improvement (@tarelli, @adrianq)

Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see instructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.

Part of the work in this release was supported by Open Source Brain and Virtual Fly Brain through multiple Wellcome Trust grants.

Downloads

Geppetto release 0.2.7

@tarelli tarelli released this Nov 25, 2015 · 130 commits to master since this release

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Install Instructions | Documentation | Live deployment

New in release 0.2.7-alpha:

  • Added support for visualizing NeuroML inhomogeneous channel densities (@adrianq)
  • Improved selection (@Robbie1977,@tarelli)
  • Added visual group support also when using line based visualization (@tarelli)
  • Add units to Plotting widget (@gidili)
  • Add pointers support to Popup widget (@gidili)

This release doesn't include the SPH bundles which are currently undergoing a refactoring to be integrated with the new experiment based workflows.
Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see instructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.

Part of the work in this release was supported by Virtual Fly Brain and Open Source Brain through a grant from the Wellcome Trust.

Downloads

Geppetto release 0.2.6

@tarelli tarelli released this Oct 10, 2015 · 135 commits to master since this release

Geppetto logo

Install Instructions | Documentation | Live deployment

New in release 0.2.6-alpha:

This release doesn't include the SPH bundles which are currently undergoing a refactoring to be integrated with the new experiment based workflows.
Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see intructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.

Part of the work in this release was supported by Virtual Fly Brain and Open Source Brain through a grant from the Wellcome Trust and by the OpenWorm Kickstarter campaign.

Downloads

Geppetto release 0.2.5

@tarelli tarelli released this Aug 13, 2015 · 142 commits to master since this release

Geppetto logo

Install Instructions | Documentation | Live deployment

New in release 0.2.5-alpha:

This release doesn't include the SPH bundles which are currently undergoing a refactoring to be integrated with the new experiment based workflows.
Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see intructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.

Part of the work in this release was supported by Open Source Brain through a grant from the Wellcome Trust and by the OpenWorm Kickstarter campaign.

Downloads

Geppetto release 0.2.4

@tarelli tarelli released this Jul 14, 2015 · 144 commits to master since this release

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Install Instructions | Documentation | Live deployment

New in release 0.2.4-alpha:

* Experiment workflows refers to the ability of running a simulation asynchronously and independently of the user session. The simulation results are now recorded and persisted, streamed to the client and re-played in the browser.

This release doesn't include the SPH bundles which are currently undergoing a refactoring to be integrated with the new experiment based workflows.
Database and user accounts support requires a Geppetto deployment inclusive of org.geppetto.persistence and MySQL database installed, see intructions to set it up.
Running of NEURON simulations requires a deployment with org.geppetto.simulator.external and NEURON installed in the server.

Part of the work in this release was supported by Open Source Brain through a grant from the Wellcome Trust and by the OpenWorm Kickstarter campaign.

Downloads