{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"relion-documents","owner":"3dem","isFork":false,"description":"Documentations for RELION","allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":1,"issueCount":0,"starsCount":10,"forksCount":9,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-11T01:44:04.619Z"}},{"type":"Public","name":"model-angelo","owner":"3dem","isFork":false,"description":"Automatic atomic model building program for cryo-EM maps","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":37,"starsCount":111,"forksCount":18,"license":"MIT License","participation":[0,0,0,0,7,1,2,0,0,0,22,1,10,6,5,0,6,1,8,12,4,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-09T18:03:06.964Z"}},{"type":"Public","name":"emhub","owner":"3dem","isFork":false,"description":"Web application for monitor EM results","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":10,"starsCount":11,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-01T16:41:41.430Z"}},{"type":"Public","name":"emtools","owner":"3dem","isFork":false,"description":"Basic utilities for CryoEM data manipulation","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":5,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-01T16:00:44.630Z"}},{"type":"Public","name":"em-testdata","owner":"3dem","isFork":false,"description":"EM related files (metadata, image, etc) used for running basic tests","allTopics":[],"primaryLanguage":{"name":"Starlark","color":"#76d275"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-24T18:28:54.198Z"}},{"type":"Public","name":"relion","owner":"3dem","isFork":false,"description":"Image-processing software for cryo-electron microscopy","allTopics":["gui","hpc","molecular-structures","cuda","image-processing","nvidia","high-performance-computing","graphics-programming","ctf","regularization","cryo-em","microscopy","likelihood","maximum-likelihood","optimization-algorithms","relion","molecular-biology","atomistic-models","biomolecular-dynamics","microscope"],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":7,"issueCount":162,"starsCount":437,"forksCount":194,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-20T09:38:40.497Z"}},{"type":"Public","name":"relion-blush","owner":"3dem","isFork":false,"description":"Blush refinement - For use in RELION-5","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T13:42:13.561Z"}},{"type":"Public","name":"DynaMight","owner":"3dem","isFork":false,"description":"Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":6,"starsCount":19,"forksCount":6,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-19T09:04:59.584Z"}},{"type":"Public","name":"relion-classranker","owner":"3dem","isFork":false,"description":"RELION automatic 2D class selection","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":5,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-22T17:16:00.051Z"}},{"type":"Public","name":"emtable","owner":"3dem","isFork":false,"description":"Simple module to deal with EM tabular data (aka metadata)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":4,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-25T10:55:12.677Z"}},{"type":"Public","name":"topaz","owner":"3dem","isFork":true,"description":"Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":7,"forksCount":63,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-25T09:27:18.343Z"}},{"type":"Public","name":"externprior","owner":"3dem","isFork":false,"description":"RELION external reconstruct functionality","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":5,"starsCount":11,"forksCount":2,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-09-11T15:09:57.030Z"}},{"type":"Public","name":"emvis","owner":"3dem","isFork":false,"description":"Visualization tools for EM data analysis (based on datavis)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":4,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-04-30T11:58:14.062Z"}},{"type":"Public","name":"datavis","owner":"3dem","isFork":false,"description":"Visualization tools for Scientific Data analysis (e.g Images and Tables)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":5,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-04-30T11:58:02.446Z"}},{"type":"Public","name":"emcore","owner":"3dem","isFork":false,"description":"Basic image processing library for Electron Microscopy","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":4,"starsCount":5,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-03-23T13:50:31.261Z"}},{"type":"Public","name":"emhub-testdata","owner":"3dem","isFork":false,"description":"Some testdata for emhub","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-02-22T11:01:03.539Z"}}],"repositoryCount":16,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"3dem repositories"}