{"payload":{"pageCount":13,"repositories":[{"type":"Public","name":"abc_atlas_access","owner":"AllenInstitute","isFork":false,"description":"Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":7,"issueCount":13,"starsCount":45,"forksCount":19,"license":"Other","participation":[1,46,4,17,14,3,0,0,0,0,0,0,1,0,0,0,0,1,0,0,0,3,0,2,4,0,1,0,0,1,0,3,0,0,0,0,0,0,0,0,0,0,0,0,2,1,3,3,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-09T22:14:19.341Z"}},{"type":"Public","name":"biofile-finder","owner":"AllenInstitute","isFork":false,"description":"An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":3,"issueCount":41,"starsCount":2,"forksCount":1,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,0,7,3,7,0,12,8,3,5,1,8,4,1,16,24,55,1,16,12,10,54,45,3,0,8,20,10],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-09T22:08:13.975Z"}},{"type":"Public","name":"Perisomatic_Based_CellTyping","owner":"AllenInstitute","isFork":true,"description":"Repository to accompany the manuscript Perisomatic Ultrastructure Efficiently Classifies Cells in Mouse Cortex. ","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-09T18:42:29.704Z"}},{"type":"Public","name":"npc_lims","owner":"AllenInstitute","isFork":false,"description":"Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":7,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-09T18:18:11.100Z"}},{"type":"Public","name":"syringepump","owner":"AllenInstitute","isFork":true,"description":"python code for syringepump.com syringe pumps","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-09T17:36:01.690Z"}},{"type":"Public","name":"neuroanalysis","owner":"AllenInstitute","isFork":true,"description":"Modular analysis tools for neurophysiology data","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":1,"starsCount":7,"forksCount":20,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-09T14:01:21.223Z"}},{"type":"Public","name":"MIES","owner":"AllenInstitute","isFork":false,"description":"Multichannel Igor Electrophysiology Suite","allTopics":["electrophysiology","igor-pro","supported"],"primaryLanguage":{"name":"IGOR Pro","color":"#0000cc"},"pullRequestCount":12,"issueCount":285,"starsCount":21,"forksCount":6,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-09T11:12:14.267Z"}},{"type":"Public","name":"brain_observatory_utilities","owner":"AllenInstitute","isFork":false,"description":"A repository for analysis tools for data available from the AllenSDK","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":2,"issueCount":11,"starsCount":4,"forksCount":2,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-09T07:26:46.572Z"}},{"type":"Public","name":"cplAE_MET","owner":"AllenInstitute","isFork":false,"description":"Coupled autoencoder extension for MET analysis. ","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-08T22:12:40.148Z"}},{"type":"Public","name":"merquaco","owner":"AllenInstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-08T21:24:54.344Z"}},{"type":"Public","name":"MICrONS_workshop_neuroai2024","owner":"AllenInstitute","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-08T20:48:45.903Z"}},{"type":"Public","name":"npc_sessions_cache","owner":"AllenInstitute","isFork":false,"description":"Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-08T20:17:18.403Z"}},{"type":"Public","name":"axonal_connectomics","owner":"AllenInstitute","isFork":false,"description":"Repository for tools developed for axonal connectomics","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":3,"starsCount":2,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-08T20:12:10.377Z"}},{"type":"Public","name":"brain_observatory_qc","owner":"AllenInstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":7,"issueCount":88,"starsCount":2,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-07T18:35:17.761Z"}},{"type":"Public","name":"openscope_databook","owner":"AllenInstitute","isFork":false,"description":"OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈","allTopics":["visualization","python","reproducible-research","data-visualization","data-analysis","nwb","dandi-archive"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":10,"starsCount":61,"forksCount":19,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-07T04:02:49.618Z"}},{"type":"Public","name":"mtrain_regimens","owner":"AllenInstitute","isFork":false,"description":"Repository to track training stages and regimens for visual behavior","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":14,"starsCount":2,"forksCount":4,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-07T03:39:50.434Z"}},{"type":"Public","name":"scrattch.bigcat","owner":"AllenInstitute","isFork":false,"description":"iterative clustering pipeline of big single cell datasets.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":2,"issueCount":4,"starsCount":19,"forksCount":8,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-07T00:31:02.758Z"}},{"type":"Public","name":"Extract_Somatic_Features","owner":"AllenInstitute","isFork":false,"description":"A pipeline to extract soma and nucleus features from the segmentation of precomputed EM datasets. ","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-06T19:45:15.617Z"}},{"type":"Public","name":"schelp","owner":"AllenInstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-06T19:27:11.052Z"}},{"type":"Public","name":"scrattch.mapping","owner":"AllenInstitute","isFork":false,"description":"Genearlized mapping scripts for RNA-seq and Patch-seq data","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":6,"starsCount":6,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-05T23:33:17.174Z"}},{"type":"Public","name":"microns_tutorial","owner":"AllenInstitute","isFork":false,"description":"MICrONS databook and analysis tutorials","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-05T21:20:38.012Z"}},{"type":"Public","name":"deep-neurographs","owner":"AllenInstitute","isFork":false,"description":"Neuron reconstruction framework that detects and corrects false splits in a predicted segmentation.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-04T06:53:12.129Z"}},{"type":"Public","name":"axon_id","owner":"AllenInstitute","isFork":false,"description":"Tools used in identifying the axons and dendrites of neurons","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-03T00:40:00.098Z"}},{"type":"Public","name":"np_notebooks","owner":"AllenInstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-02T21:14:45.496Z"}},{"type":"Public","name":"npc_shields","owner":"AllenInstitute","isFork":false,"description":"Tools for Neuropixels probe insertion into SHIELD implants: providing suggested targets, recording actual insertions, storing notes.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,33,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6,20,0,0,0,7,2,0,0,0,0,0,5,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-02T20:14:05.814Z"}},{"type":"Public","name":"cell_type_mapper","owner":"AllenInstitute","isFork":false,"description":"Repository for storing prototype functionality implementations for the BKP","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":4,"starsCount":10,"forksCount":2,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-02T17:20:46.560Z"}},{"type":"Public","name":"jem","owner":"AllenInstitute","isFork":false,"description":"Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments. ","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-01T20:17:09.974Z"}},{"type":"Public","name":"asap-modules","owner":"AllenInstitute","isFork":false,"description":"Shared repo for EM connectomics and Array Tomography render based image processing modules ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":12,"starsCount":12,"forksCount":4,"license":"BSD 2-Clause \"Simplified\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-31T22:59:32.559Z"}},{"type":"Public","name":"visual_behavior_analysis","owner":"AllenInstitute","isFork":false,"description":"Python package for analyzing behavioral data for Brain Observatory: Visual Behavior","allTopics":["python","behavior","neuroscience","psychology","psychophysics"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":8,"issueCount":65,"starsCount":21,"forksCount":6,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-31T08:01:31.350Z"}},{"type":"Public","name":"scrattch.taxonomy","owner":"AllenInstitute","isFork":false,"description":"Allen Institute Taxonomy building R package","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":10,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-30T21:06:00.577Z"}}],"repositoryCount":377,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"AllenInstitute repositories"}