{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"CAMISIM","owner":"CAMI-challenge","isFork":false,"description":"CAMISIM: Simulating metagenomes and microbial communities","topicNames":["metagenomics","simulation"],"topicsNotShown":0,"allTopics":["metagenomics","simulation"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":23,"starsCount":146,"forksCount":37,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T10:34:59.209Z"}},{"type":"Public","name":"OPAL","owner":"CAMI-challenge","isFork":false,"description":"OPAL: Open-community Profiling Assessment tooL","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":5,"starsCount":25,"forksCount":6,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-11T21:01:15.512Z"}},{"type":"Public","name":"AMBER","owner":"CAMI-challenge","isFork":false,"description":"AMBER: Assessment of Metagenome BinnERs","topicNames":["benchmarking","metagenomics","binning","biobox"],"topicsNotShown":0,"allTopics":["benchmarking","metagenomics","binning","biobox"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":2,"starsCount":25,"forksCount":6,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-11T20:55:02.487Z"}},{"type":"Public","name":"CAMITAX","owner":"CAMI-challenge","isFork":false,"description":"CAMITAX: Taxon labels for microbial genomes","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":4,"starsCount":29,"forksCount":4,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-14T13:25:01.143Z"}},{"type":"Public","name":"second_challenge_evaluation","owner":"CAMI-challenge","isFork":false,"description":"Repository for codes, analyses and visualizations for the CAMI II challenges","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":7,"starsCount":8,"forksCount":5,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-04T07:46:15.077Z"}},{"type":"Public","name":"bioconda-recipes","owner":"CAMI-challenge","isFork":true,"description":"Conda recipes for the bioconda channel.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3067,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-22T06:07:05.925Z"}},{"type":"Public","name":"data","owner":"CAMI-challenge","isFork":false,"description":"Pointers to publicly available assembly, binning, and profiling results","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":4,"starsCount":4,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-11-05T09:09:14.787Z"}},{"type":"Public","name":"file_formats","owner":"CAMI-challenge","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-11-06T04:59:04.039Z"}},{"type":"Public","name":"contest_information","owner":"CAMI-challenge","isFork":false,"description":"File format specifications, Presentation materials and other information ","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":4,"starsCount":3,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-11-06T04:44:56.577Z"}},{"type":"Public","name":"CamiClient","owner":"CAMI-challenge","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":1,"issueCount":2,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-10-13T06:43:33.068Z"}},{"type":"Public","name":"university-email-domains","owner":"CAMI-challenge","isFork":true,"description":"Domains used for university-issued email addresses","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":13,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-05-26T12:11:26.177Z"}},{"type":"Public","name":"BenchmarkingToolkitTutorial","owner":"CAMI-challenge","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-03-06T11:44:33.634Z"}},{"type":"Public","name":"docker_profiling_tools","owner":"CAMI-challenge","isFork":false,"description":"Stefans Collection of Dockerfiles and helper scripts for profiling tools","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":3,"starsCount":1,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-02-28T01:47:38.618Z"}},{"type":"Public","name":"ObjectStorageWrapper","owner":"CAMI-challenge","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-11-21T13:07:35.418Z"}},{"type":"Public","name":"CamiIO","owner":"CAMI-challenge","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-10-12T10:11:45.851Z"}},{"type":"Public","name":"firstchallenge_evaluation","owner":"CAMI-challenge","isFork":false,"description":"Directory containing example result visualizations and scripts for generating figures and tables","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":12,"starsCount":2,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-09-17T14:39:57.461Z"}},{"type":"Public","name":"CAMISIM-DATA","owner":"CAMI-challenge","isFork":false,"description":"Supplementary data for CAMISIM","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-07-19T08:14:47.242Z"}},{"type":"Public","name":"MetagenomeSimulationPipeline","owner":"CAMI-challenge","isFork":false,"description":"The metagenome simulation pipeline was permanently moved to its new destination: https://github.com/CAMI-challenge/CAMISIM","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-03-08T09:03:10.909Z"}},{"type":"Public","name":"bbx-profiling-evaluation-dk","owner":"CAMI-challenge","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":3,"starsCount":1,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-11-02T06:27:18.480Z"}},{"type":"Public","name":"quast","owner":"CAMI-challenge","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-09-07T19:47:49.472Z"}},{"type":"Public","name":"genome_binning_evaluation","owner":"CAMI-challenge","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-08-23T07:50:23.170Z"}},{"type":"Public","name":"bbx-binning-evaluation-jd","owner":"CAMI-challenge","isFork":false,"description":"A biobox for CAMI binning evaluation","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":4,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-07-19T14:33:16.409Z"}},{"type":"Public","name":"quast_frc","owner":"CAMI-challenge","isFork":true,"description":"Genome assembly evaluation tool","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":73,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-05-05T18:54:12.737Z"}},{"type":"Public","name":"frc_hacking","owner":"CAMI-challenge","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-05-04T16:06:34.825Z"}},{"type":"Public","name":"bbx-profiling-evaluation-krona","owner":"CAMI-challenge","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-04-23T13:31:12.343Z"}},{"type":"Public","name":"cami-concoct","owner":"CAMI-challenge","isFork":false,"description":"Biobox of the binning tool CONCOCT for the cami challenge","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-06-27T11:51:37.161Z"}},{"type":"Public","name":"bbx-binning-evaluation-ig","owner":"CAMI-challenge","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-01-14T13:47:08.585Z"}},{"type":"Public","name":"evaluation","owner":"CAMI-challenge","isFork":false,"description":"Evaluation tools","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-09-03T08:14:15.879Z"}},{"type":"Public","name":"docker-camibase-profiling","owner":"CAMI-challenge","isFork":false,"description":"A container image to use for metagenomic community profiling programs","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-05-05T07:36:59.116Z"}},{"type":"Public","name":"docker-camibase-binning-evaluation","owner":"CAMI-challenge","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-02-20T16:02:21.442Z"}}],"repositoryCount":35,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}