{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"Cirro-client-ts","owner":"CirroBio","isFork":false,"description":"API client for TypeScript","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-10T16:53:43.682Z"}},{"type":"Public","name":"Cirro-client","owner":"CirroBio","isFork":false,"description":"Python SDK to interact with Cirro","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":5,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-07T22:51:37.236Z"}},{"type":"Public","name":"Cirro-client-python","owner":"CirroBio","isFork":false,"description":"API client for Python","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-03T17:37:46.104Z"}},{"type":"Public","name":"nf-differential-abundance","owner":"CirroBio","isFork":false,"description":"Nextflow workflow for differential abundance analysis","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T22:08:13.430Z"}},{"type":"Public","name":"nf-xenium-ranger","owner":"CirroBio","isFork":false,"description":"Nextflow workflow running Xenium Ranger","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-22T16:40:32.233Z"}},{"type":"Public","name":"nf-samestr","owner":"CirroBio","isFork":false,"description":"Nextflow workflow running samestr for comparing bacterial strains across metagenomes","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T23:09:07.158Z"}},{"type":"Public","name":"ww-vc-trio","owner":"CirroBio","isFork":true,"description":"Variant calling WDL workflow using a trio of variant callers and analyzing consensus among them","allTopics":[],"primaryLanguage":{"name":"WDL","color":"#42f1f4"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-06T17:41:53.079Z"}},{"type":"Public","name":"nf-sourmash","owner":"CirroBio","isFork":false,"description":"Nextflow workflow running sourmash","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-17T19:09:10.708Z"}},{"type":"Public","name":"nf-humann","owner":"CirroBio","isFork":false,"description":"Nextflow workflow running the HUMAnN metagenomic analysis tool","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-05T16:57:28.112Z"}},{"type":"Public","name":"Cirro-Annotation","owner":"CirroBio","isFork":false,"description":"Project to export HDF content as Parquet for Cirro","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-30T22:34:17.035Z"}},{"type":"Public","name":"nf-nextstrain","owner":"CirroBio","isFork":false,"description":"Nextflow workflow to run Nextstrain builds","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-18T22:06:06.679Z"}},{"type":"Public","name":"cromwell","owner":"CirroBio","isFork":true,"description":"Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments","allTopics":[],"primaryLanguage":{"name":"Scala","color":"#c22d40"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":354,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-17T23:20:28.579Z"}},{"type":"Public","name":".github","owner":"CirroBio","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-14T01:41:13.923Z"}},{"type":"Public","name":"ampliseq","owner":"CirroBio","isFork":true,"description":"Amplicon sequencing analysis workflow using DADA2 and QIIME2","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":107,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-28T17:10:48.018Z"}},{"type":"Public","name":"nfcore-test-datasets","owner":"CirroBio","isFork":true,"description":"Test data to be used for automated testing with the nf-core pipelines","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":326,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-27T17:38:23.489Z"}},{"type":"Public","name":"nf-arcashla","owner":"CirroBio","isFork":false,"description":"Nextflow workflow to perform HLA typing from RNAseq data (arcasHLA)","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-07T23:46:12.301Z"}}],"repositoryCount":16,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"CirroBio repositories"}