{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"DEEPScreen2","owner":"HUBioDataLab","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-14T17:31:43.114Z"}},{"type":"Public","name":"CROssBAR_LLM","owner":"HUBioDataLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,10,0,3,0,0,18,5,0,0,6,4,0,0,0,1,0,4,4,8,4,0,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-13T14:06:28.169Z"}},{"type":"Public","name":"DeepResponse","owner":"HUBioDataLab","isFork":true,"description":"DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling","allTopics":["machine-learning","deep-learning","convolutional-neural-networks","cancer-research","multi-omics","graph-neural-networks","drug-response-prediction","graph-transformer"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":null,"participation":[0,0,0,7,0,0,0,0,0,0,5,0,0,0,0,0,0,3,0,7,1,2,4,0,5,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-09T13:27:21.632Z"}},{"type":"Public","name":"DrugGEN","owner":"HUBioDataLab","isFork":false,"description":"Official implementation of DrugGEN","allTopics":["machine-learning","pytorch","transformer","generative-adversarial-network","drug-discovery","generative-models","graph-neural-networks","drug-target-interactions","denovo-design","deep-learning"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":2,"starsCount":43,"forksCount":14,"license":"GNU General Public License v3.0","participation":[0,0,6,10,0,0,0,4,0,0,0,0,0,6,0,0,0,0,0,0,0,0,8,15,3,0,14,4,0,4,30,30,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,7,42,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-04T13:43:16.959Z"}},{"type":"Public","name":"SELFormerv2","owner":"HUBioDataLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13,5,11,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-04T11:18:37.562Z"}},{"type":"Public","name":"ProtBENCH","owner":"HUBioDataLab","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":10,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T16:35:16.760Z"}},{"type":"Public","name":"SELFormer","owner":"HUBioDataLab","isFork":false,"description":"SELFormer: Molecular Representation Learning via SELFIES Language Models","allTopics":["machine-learning","deep-learning","cheminformatics","transformers","drug-discovery","representation-learning","language-model"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":63,"forksCount":12,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T16:31:56.491Z"}},{"type":"Public","name":"Domain2GO","owner":"HUBioDataLab","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-20T10:45:14.981Z"}},{"type":"Public","name":"CROssBARv2","owner":"HUBioDataLab","isFork":false,"description":"This is a repo for migration of CROssBAR data to the Neo4j database via BioCypher","allTopics":["bioinformatics","knowledge-graph"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":5,"forksCount":5,"license":null,"participation":[0,7,0,0,0,0,7,2,0,0,0,0,0,0,0,2,0,8,0,1,0,0,7,8,2,6,7,2,0,3,16,9,16,0,0,0,13,1,3,0,0,0,0,0,9,0,6,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T14:11:24.097Z"}},{"type":"Public","name":"CROssBAR-Data-Process","owner":"HUBioDataLab","isFork":false,"description":"CROssBAR v2 GraphDB Data Process","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":2,"license":null,"participation":[0,0,0,0,0,0,0,0,1,2,0,0,0,0,0,0,0,0,0,0,0,1,2,14,4,3,3,2,0,5,6,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-25T14:33:21.760Z"}},{"type":"Public","name":"CROssBAR-pypath","owner":"HUBioDataLab","isFork":true,"description":"Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":43,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-25T11:46:17.246Z"}},{"type":"Public","name":"ASCARIS","owner":"HUBioDataLab","isFork":true,"description":"ASCARIS: Annotation & Structure-Based Representation of SAVs","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-11T13:30:04.671Z"}},{"type":"Public","name":"HoliLoc","owner":"HUBioDataLab","isFork":true,"description":"HoliLoc: Image, Sequence, and Interactome Based Prediction of Protein Subcellular Localization","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-23T09:57:37.815Z"}},{"type":"Public","name":"TransPRSFP","owner":"HUBioDataLab","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-05T15:36:50.960Z"}},{"type":"Public","name":"CROssBARv1","owner":"HUBioDataLab","isFork":true,"description":"Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations","allTopics":[],"primaryLanguage":{"name":"PHP","color":"#4F5D95"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":11,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-22T20:09:44.616Z"}},{"type":"Public","name":"website","owner":"HUBioDataLab","isFork":false,"description":"Website for HU Biological Data Science Laboratory","allTopics":[],"primaryLanguage":{"name":"Astro","color":"#ff5a03"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-23T14:44:50.072Z"}},{"type":"Public","name":"SELFormer_back","owner":"HUBioDataLab","isFork":true,"description":"SELFormer: Molecular Representation Learning via SELFIES Language Models","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-10T21:38:56.034Z"}},{"type":"Public","name":"DrugApp","owner":"HUBioDataLab","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":7,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-14T14:53:46.633Z"}},{"type":"Public","name":"awesome-denovo-papers","owner":"HUBioDataLab","isFork":true,"description":"Awesome De novo drugs design papers","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":10,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-06T15:37:02.837Z"}},{"type":"Public","name":"DRUIDom","owner":"HUBioDataLab","isFork":true,"description":"DRUIDom (DRUg Interacting Domains): a computational method for predicting new drug/compound - target protein interactions for drug discovery and repurposing, via mapping ligands to structural domains","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-12-06T09:41:34.305Z"}},{"type":"Public","name":"HPO2GO","owner":"HUBioDataLab","isFork":true,"description":"Mapping between HPO and GO terms","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-03-26T22:23:48.132Z"}}],"repositoryCount":21,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}