Repositories list

• mrtrix3

  Public
  MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractogra…

  C++

  •

  Mozilla Public License 2.0

  •206206 forks in MRtrix3/mrtrix3•354354 stars in MRtrix3/mrtrix3•613613 issues in MRtrix3/mrtrix3•101101 pull requests in MRtrix3/mrtrix3•Updated Oct 15, 2026Oct 15, 2026

• test_data

  Public
  used to host data for automated testing

  Python

  •33 forks in MRtrix3/test_data•00 stars in MRtrix3/test_data•00 issues in MRtrix3/test_data•11 pull request in MRtrix3/test_data•Updated Sep 22, 2026Sep 22, 2026

• script_test_data

  Public
  used to host data for testing of Python scripts

  Brainfuck

  •00 forks in MRtrix3/script_test_data•11 star in MRtrix3/script_test_data•00 issues in MRtrix3/script_test_data•00 pull requests in MRtrix3/script_test_data•Updated Aug 6, 2026Aug 6, 2026

• MinGW

  Public
  Shell

  •33 forks in MRtrix3/MinGW•00 stars in MRtrix3/MinGW•00 issues in MRtrix3/MinGW•00 pull requests in MRtrix3/MinGW•Updated Jun 18, 2026Jun 18, 2026

• MRtrix3_demo_code

  Public
  Demonstration code as included in the MRtrix3 NeuroImage 2019 paper.

  Python

  •00 forks in MRtrix3/MRtrix3_demo_code•00 stars in MRtrix3/MRtrix3_demo_code•00 issues in MRtrix3/MRtrix3_demo_code•11 pull request in MRtrix3/MRtrix3_demo_code•Updated Jun 17, 2026Jun 17, 2026

• external-project-template

  Public
  00 forks in MRtrix3/external-project-template•00 stars in MRtrix3/external-project-template•11 issue in MRtrix3/external-project-template•11 pull request in MRtrix3/external-project-template•Updated Jun 8, 2026Jun 8, 2026

• webgpu-dawn-binaries

  Public
  11 fork in MRtrix3/webgpu-dawn-binaries•00 stars in MRtrix3/webgpu-dawn-binaries•00 issues in MRtrix3/webgpu-dawn-binaries•00 pull requests in MRtrix3/webgpu-dawn-binaries•Updated Mar 27, 2026Mar 27, 2026

• MRtrix3.github.io

  Public
  Repository to hold the MRtrix3 website

  SCSS

  •33 forks in MRtrix3/MRtrix3.github.io•11 star in MRtrix3/MRtrix3.github.io•11 issue in MRtrix3/MRtrix3.github.io•00 pull requests in MRtrix3/MRtrix3.github.io•Updated Mar 10, 2026Mar 10, 2026

• mrpeek

  Public
  A medical image viewer in the terminal.

  C++

  •11 fork in MRtrix3/mrpeek•3838 stars in MRtrix3/mrpeek•1111 issues in MRtrix3/mrpeek•11 pull request in MRtrix3/mrpeek•Updated Feb 18, 2026Feb 18, 2026

• conda-build

  Public
  recipe to build anaconda / miniconda MRtrix3 package

  Shell

  •11 fork in MRtrix3/conda-build•00 stars in MRtrix3/conda-build•22 issues in MRtrix3/conda-build•00 pull requests in MRtrix3/conda-build•Updated Oct 21, 2025Oct 21, 2025

• fetch_changelog

  Public
  Used to automate the creation of a changelog based on merge commits

  Python

  •

  Mozilla Public License 2.0

  •00 forks in MRtrix3/fetch_changelog•00 stars in MRtrix3/fetch_changelog•11 issue in MRtrix3/fetch_changelog•00 pull requests in MRtrix3/fetch_changelog•Updated Oct 20, 2025Oct 20, 2025

• macos-installer

  Public
  Scripts to create installer for macOS

  Shell

  •11 fork in MRtrix3/macos-installer•11 star in MRtrix3/macos-installer•00 issues in MRtrix3/macos-installer•11 pull request in MRtrix3/macos-installer•Updated Apr 30, 2025Apr 30, 2025

• mrtrix3-with3p

  Public
  A containerised version of MRtrix3 that includes third-party neuroimaging commands invoked by MRtrix3 tools

  Mozilla Public License 2.0

  •00 forks in MRtrix3/mrtrix3-with3p•00 stars in MRtrix3/mrtrix3-with3p•44 issues in MRtrix3/mrtrix3-with3p•11 pull request in MRtrix3/mrtrix3-with3p•Updated Mar 12, 2025Mar 12, 2025

• containers

  Public
  Developer tools for generating minified containers for MRtrix3

  Dockerfile

  •22 forks in MRtrix3/containers•00 stars in MRtrix3/containers•44 issues in MRtrix3/containers•11 pull request in MRtrix3/containers•Updated Jan 19, 2025Jan 19, 2025

• workshop

  Public
  Containers for software workshop material consumption

  Dockerfile

  •00 forks in MRtrix3/workshop•00 stars in MRtrix3/workshop•44 issues in MRtrix3/workshop•00 pull requests in MRtrix3/workshop•Updated Nov 16, 2024Nov 16, 2024

• cmdline-tutorial

  Public
  Command-line tutorial

  Mozilla Public License 2.0

  •33 forks in MRtrix3/cmdline-tutorial•00 stars in MRtrix3/cmdline-tutorial•00 issues in MRtrix3/cmdline-tutorial•00 pull requests in MRtrix3/cmdline-tutorial•Updated Oct 7, 2024Oct 7, 2024

• developer-documentation

  Public
  Used purely to host MRtrix3's Doxygen-generated development documentation

  HTML

  •00 forks in MRtrix3/developer-documentation•00 stars in MRtrix3/developer-documentation•00 issues in MRtrix3/developer-documentation•00 pull requests in MRtrix3/developer-documentation•Updated Jul 4, 2022Jul 4, 2022

• DICOM_tests

  Public
  scripts to perform DICOM testing for MRtrix3 library

  Shell

  •00 forks in MRtrix3/DICOM_tests•00 stars in MRtrix3/DICOM_tests•00 issues in MRtrix3/DICOM_tests•00 pull requests in MRtrix3/DICOM_tests•Updated Mar 10, 2022Mar 10, 2022

• homebrew-mrtrix3

  Public
  homebrew formula to make installing mrtrix on OSX easier

  Ruby

  •00 forks in MRtrix3/homebrew-mrtrix3•11 star in MRtrix3/homebrew-mrtrix3•11 issue in MRtrix3/homebrew-mrtrix3•00 pull requests in MRtrix3/homebrew-mrtrix3•Updated Nov 29, 2021Nov 29, 2021

• script_test_action

  Public
  Requisite files for integration of Docker container-based testing of MRtrix3 Python scripts

  Dockerfile

  •00 forks in MRtrix3/script_test_action•11 star in MRtrix3/script_test_action•00 issues in MRtrix3/script_test_action•00 pull requests in MRtrix3/script_test_action•Updated Feb 8, 2021Feb 8, 2021