{"payload":{"pageCount":6,"repositories":[{"type":"Public","name":"thalamocortical_development","owner":"PennLINC","isFork":false,"description":"https://pennlinc.github.io/thalamocortical_development/","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,15,3,10,0,1,2,0,7,8,1,6,0,0,3,0,0,2,0,0,0,1,0,0,2],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T21:34:48.681Z"}},{"type":"Public","name":"xcp_d","owner":"PennLINC","isFork":false,"description":"Post-processing of fMRIPrep, NiBabies, and HCP outputs","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":10,"issueCount":46,"starsCount":63,"forksCount":21,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[1,1,1,3,7,14,1,1,0,0,3,1,0,0,0,0,1,2,2,1,2,4,2,4,10,0,0,0,0,9,9,1,0,0,2,5,1,3,0,1,3,6,4,7,16,5,4,6,11,6,3,1],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T16:02:04.301Z"}},{"type":"Public","name":"qsipost","owner":"PennLINC","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[1,2,1,2,1,0,1,0,0,0,2,0,4,1,0,2,0,0,0,5,2,0,0,0,0,0,0,0,2,6,0,0,0,2,3,0,2,2,3,1,5,2,2,0,0,0,0,0,6,6,7,6],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T15:57:57.822Z"}},{"type":"Public","name":"qsiprep","owner":"PennLINC","isFork":false,"description":"Preprocessing and reconstruction of diffusion MRI","topicNames":["python","pipelines","connectomics","diffusion-mri","tractography"],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":10,"issueCount":111,"starsCount":132,"forksCount":53,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[1,2,1,2,1,0,1,0,0,0,2,0,4,1,0,2,0,0,0,5,2,0,0,0,0,0,0,0,2,6,0,0,0,2,3,0,2,2,3,1,5,2,2,0,0,0,0,0,6,6,7,1],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T15:13:11.273Z"}},{"type":"Public","name":"aslprep","owner":"PennLINC","isFork":false,"description":"Preprocessing of arterial spin labeling (ASL) data","topicNames":["asl","cbf","bids-apps"],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":7,"issueCount":36,"starsCount":35,"forksCount":15,"license":"Other","participation":[3,2,2,3,1,1,2,3,0,0,0,0,0,0,0,0,2,0,1,2,1,1,1,0,1,2,0,0,1,11,2,2,0,2,0,1,2,0,0,0,0,0,0,0,0,1,1,2,3,3,1,6],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T12:55:19.413Z"}},{"type":"Public","name":"fw-heudiconv","owner":"PennLINC","isFork":false,"description":"Heuristic-based Data Curation on Flywheel","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":6,"starsCount":6,"forksCount":11,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-06T18:58:43.514Z"}},{"type":"Public","name":"PennLINC.github.io","owner":"PennLINC","isFork":false,"description":"Documentation for PennLINC","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":3,"issueCount":28,"starsCount":2,"forksCount":15,"license":"MIT License","participation":[0,0,3,0,0,4,3,1,3,1,1,4,0,0,1,23,0,0,0,1,1,0,1,0,0,3,0,2,1,2,2,4,0,0,0,1,0,0,0,1,0,73,0,1,42,11,0,0,0,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-03T16:41:57.166Z"}},{"type":"Public","name":"aslprep_build","owner":"PennLINC","isFork":false,"description":"Builds a base docker image for xcp-d","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":3,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,0,0,0,0,0,0,2,3,5,0,0,0,0,0,0,3,17,1,0,0,0,1,0,0,2,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,15,0,0,10,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-03T14:50:15.677Z"}},{"type":"Public","name":"qsiprep_build","owner":"PennLINC","isFork":false,"description":"Builds the dependencies for qsiprep","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":2,"starsCount":2,"forksCount":1,"license":"Apache License 2.0","participation":[1,0,0,0,0,0,0,0,0,0,0,4,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,5,0,0,0,0,0,0,1,0,0,0,3,6,11,15,3,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-01T20:15:19.253Z"}},{"type":"Public","name":"xcp_paper","owner":"PennLINC","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,3,1,0,5,0,0,0,0,0,0,0,0,0,0,5,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,5,0,0,2,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-26T17:41:20.333Z"}},{"type":"Public","name":"bids-specification","owner":"PennLINC","isFork":true,"description":"Brain Imaging Data Structure (BIDS) Specification","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":152,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-24T20:11:42.156Z"}},{"type":"Public","name":"xcpd_build","owner":"PennLINC","isFork":false,"description":"Builds a base docker image for xcp-d","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":3,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-23T21:48:42.849Z"}},{"type":"Public","name":"CuBIDS","owner":"PennLINC","isFork":false,"description":"Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.","topicNames":["neuroscience","neuroimaging","neuroinformatics","python-package","data-curation","neuroscience-methods","neuroimaging-data-science","data-organization"],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":27,"starsCount":19,"forksCount":7,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-15T12:50:46.160Z"}},{"type":"Public","name":"MRtrix3Tissue","owner":"PennLINC","isFork":true,"description":"MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":177,"license":"Mozilla Public License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-05T00:46:09.694Z"}},{"type":"Public","name":"executivefunction","owner":"PennLINC","isFork":true,"description":"This repo includes documentation for the Executive Function project. ","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":6,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-01T19:46:19.769Z"}},{"type":"Public","name":"dipy","owner":"PennLINC","isFork":true,"description":"DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":428,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-01T13:34:02.970Z"}},{"type":"Public","name":"flywheel-deidentification","owner":"PennLINC","isFork":true,"description":"Documentation and utilities for checking de-identification of data uploaded to Flywheel","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-29T11:47:46.695Z"}},{"type":"Public","name":"exposome_PFNs_cognition","owner":"PennLINC","isFork":false,"description":"Code for the project relating exposome factors to PFN topography and cognition in ABCD, led by Arielle Keller","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-21T18:45:08.238Z"}},{"type":"Public","name":"network_replication","owner":"PennLINC","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-17T01:22:54.056Z"}},{"type":"Public","name":"xcp_d-examples","owner":"PennLINC","isFork":false,"description":"Examples of advanced use-cases for xcp_d.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-14T17:31:33.962Z"}},{"type":"Public","name":"DRIP","owner":"PennLINC","isFork":true,"description":"Data Release Integrity Pipeline","topicNames":["curation","data-integrity"],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":4,"starsCount":0,"forksCount":38,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-05T15:13:03.689Z"}},{"type":"Public","name":"skeleton","owner":"PennLINC","isFork":true,"description":"skeleton","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":38,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-05T15:13:03.689Z"}},{"type":"Public","name":"babs","owner":"PennLINC","isFork":false,"description":"BIDS App Bootstrap (BABS)","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":44,"starsCount":5,"forksCount":5,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-28T16:31:00.877Z"}},{"type":"Public template","name":"paper-template","owner":"PennLINC","isFork":false,"description":"A template repository for scientific projects.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":9,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-27T20:19:29.325Z"}},{"type":"Public","name":"luo_wm_dev","owner":"PennLINC","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":3,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-26T20:08:18.456Z"}},{"type":"Public","name":"AtlasPack","owner":"PennLINC","isFork":false,"description":"Combined cortical/subcortical atlases for xcp-d and qsiprep","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":3,"issueCount":3,"starsCount":6,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-02T13:44:11.746Z"}},{"type":"Public","name":"CAMRIS-wiki","owner":"PennLINC","isFork":false,"description":"A wiki for UPenn's Center for Magnetic Resonance Imaging and Spectroscopy. Maintained by users, not the CAMRIS staff.","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-29T16:44:11.382Z"}},{"type":"Public","name":"freesurfer_tabulate","owner":"PennLINC","isFork":false,"description":"Gathering/Creating annot files and using them to get tsvs","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":1,"issueCount":7,"starsCount":0,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-18T21:31:12.009Z"}},{"type":"Public","name":"labSlides","owner":"PennLINC","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-17T17:49:20.889Z"}},{"type":"Public","name":"gura_fc_sex","owner":"PennLINC","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-17T00:25:35.580Z"}}],"repositoryCount":163,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"mirror","text":"Mirrors"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}