{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"tgif","owner":"Roy-lab","isFork":false,"description":"Tree-Guided Integrated Factorization (TGIF)","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-02T20:51:34.178Z"}},{"type":"Public","name":"grinch","owner":"Roy-lab","isFork":false,"description":"GRiNCH: Graph-Regularized NMF and Clustering for Hi-C","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":2,"starsCount":9,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-15T20:12:20.133Z"}},{"type":"Public","name":"scMTNI","owner":"Roy-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":1,"issueCount":2,"starsCount":13,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-12T22:38:46.844Z"}},{"type":"Public","name":"Tutorial_for_Aboretum-based_DE_geneset_analysis","owner":"Roy-lab","isFork":false,"description":"A tutorial which includes Arboretum & findTransitionGenesets with an example dataset.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-10T19:13:19.863Z"}},{"type":"Public","name":"Arboretum2.0","owner":"Roy-lab","isFork":false,"description":"The Arboretum 2.0 is the next release of the original code of Arboretum. It makes running Arboretum easier by taking care of initial cluster assignments.","topicNames":["clustering"],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-02T21:10:58.544Z"}},{"type":"Public","name":"merlin-auxillary","owner":"Roy-lab","isFork":false,"description":"Downstream analysis for MERLIN inferred networks","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-19T15:44:32.412Z"}},{"type":"Public","name":"Roadmap_RegulatoryVariation","owner":"Roy-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-04T02:13:39.933Z"}},{"type":"Public","name":"Muscari","owner":"Roy-lab","isFork":false,"description":"MUSCARI (Multi-task Spectral Clustering AlgoRIthm)","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-23T04:14:54.561Z"}},{"type":"Public","name":"merlin-p_self_checkpoint","owner":"Roy-lab","isFork":false,"description":"MERLIN-P with self checkpointing for Condor","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-09T02:06:16.759Z"}},{"type":"Public","name":"clade-specific_gene_sets","owner":"Roy-lab","isFork":false,"description":"Scripts for selecting clade-specific gene sets from Arboretum result matrix","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-21T16:43:01.845Z"}},{"type":"Public","name":"maize_autophagy","owner":"Roy-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-02T02:36:27.517Z"}},{"type":"Public","name":"mvnmf","owner":"Roy-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-14T18:35:45.912Z"}},{"type":"Public","name":"drmn","owner":"Roy-lab","isFork":false,"description":"DRMN with multi-task learning regression","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-01-28T20:29:28.605Z"}},{"type":"Public","name":"drmn_utils","owner":"Roy-lab","isFork":false,"description":"Ancillary utilities for DRMN. Input processing and interpreting results.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-07-27T20:31:30.816Z"}},{"type":"Public","name":"utils","owner":"Roy-lab","isFork":false,"description":"Roy lab in-house utilities","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-21T17:41:44.739Z"}},{"type":"Public","name":"mrtle","owner":"Roy-lab","isFork":false,"description":"Multi-species regulatory network learning (Koch et al, Cell Systems 2017)","topicNames":["network-inference","multi-task-learning"],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-01T22:43:06.132Z"}},{"type":"Public","name":"aggregateSignalMotifNet","owner":"Roy-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-04-06T20:11:50.979Z"}},{"type":"Public","name":"aggregateSignalRegion_nonLog","owner":"Roy-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-04-01T18:48:40.228Z"}},{"type":"Public","name":"merlin-p","owner":"Roy-lab","isFork":false,"description":"A prior-based integrative framework for functional transcriptional regulatory network inference (Fotuhi Siahpirani & Roy, Nucleic Acids Research 2017)","topicNames":["clustering","network-inference"],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":1,"issueCount":1,"starsCount":4,"forksCount":6,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-11-18T02:25:53.280Z"}},{"type":"Public","name":"EstimateNCA","owner":"Roy-lab","isFork":false,"description":"Estimating TF activity using NCA+LASSO.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-10-17T07:05:36.041Z"}},{"type":"Public","name":"merlin","owner":"Roy-lab","isFork":false,"description":"Regulatory network inference with module prior","topicNames":["clustering","network-inference"],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-10-09T10:23:34.271Z"}},{"type":"Public","name":"HiC-Reg","owner":"Roy-lab","isFork":false,"description":"HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals","topicNames":["regression"],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":2,"starsCount":8,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-08-25T18:06:26.493Z"}},{"type":"Public","name":"PeakMapping","owner":"Roy-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-06-25T21:07:50.446Z"}},{"type":"Public","name":"compfuncgen_utils","owner":"Roy-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-02-13T18:29:59.637Z"}},{"type":"Public","name":"Escarole","owner":"Roy-lab","isFork":false,"description":"Expression State Clustering on Lineages (Escarole)","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":2,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-30T20:03:11.087Z"}},{"type":"Public","name":"learnMoE","owner":"Roy-lab","isFork":false,"description":"Performs clustering with Gaussian Mixture Modeling","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-02-18T18:32:54.674Z"}},{"type":"Public","name":"ripple_cpp","owner":"Roy-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-08-30T23:00:35.700Z"}},{"type":"Public","name":"MERLIN-P-TFA_old_code","owner":"Roy-lab","isFork":false,"description":"","topicNames":["network-inference"],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-08-29T05:32:06.487Z"}},{"type":"Public","name":"MULCCH","owner":"Roy-lab","isFork":false,"description":"","topicNames":["clustering","multi-task-learning"],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-07-10T14:50:47.429Z"}},{"type":"Public","name":"RIPPLE","owner":"Roy-lab","isFork":false,"description":"","topicNames":["classification"],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-07-07T23:26:45.945Z"}}],"repositoryCount":32,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"mirror","text":"Mirrors"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}