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@SamOliveiraLab Oliveira Lab

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    Repositories list

    17 repositories

    • partaker-v2

      Public
      PARTAKER v2 - Biofilm and Single Cell Analysis
      Python
      •1•0•21•1•Updated Aug 31, 2026Aug 31, 2026

    • environnet-sim

      Public
      Environnet desktop simulation app
      Python
      •0•0•0•0•Updated Aug 27, 2026Aug 27, 2026

    • Deepweed

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Aug 11, 2026Aug 11, 2026

    • partaker

      Public
      Tool to analyze bacterial fluorescence in time-lapse microscopy
      synthetic-biologymicrofluidicsbioimage-analysis
      synthetic-biologymicrofluidicsbioimage-analysismicroscopy-image-processing
      Jupyter Notebook
      •
      MIT License
      •1•1•1•0•Updated Jul 23, 2026Jul 23, 2026

    • fluidic-automation

      Public
      Automate pump actions, flow rates, and monitor the Pioreactor cluster in the oliveira Lab
      JavaScript
      •0•0•0•0•Updated Jul 10, 2026Jul 10, 2026

    • Samhita-Shyam-Final-Project

      Public
      2026 summer Python mini project using plots
      Jupyter Notebook
      •0•0•0•0•Updated Jun 25, 2026Jun 25, 2026

    • Viva-munk

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Jun 9, 2026Jun 9, 2026

    • DIY_DSCPM

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 1, 2026Jun 1, 2026

    • gel-image-tool

      Public
      Desktop tool for processing gel electrophoresis images
      Jupyter Notebook
      •0•0•0•0•Updated Mar 29, 2026Mar 29, 2026

    • MuFnets_frontend

      Public
      TypeScript
      •1•0•0•0•Updated Oct 8, 2025Oct 8, 2025

    • DSCPM

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 16, 2025Feb 16, 2025

    • FlowBehaviour

      Public
      Python
      •1•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • MufNet-

      Public
      Python
      •
      Apache License 2.0
      •14•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • OlivLabSite

      Public
      JavaScript
      •0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • Total_Cells_Activity_Plotting

      Public
      Plots the fluorescence level of the total population
      Jupyter Notebook
      •0•0•0•0•Updated Jul 19, 2023Jul 19, 2023

    • mamcti-1.0

      Public
      Microscope Stage Automation for Multiple-location Chamber Time-lapse Imaging
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 3, 2023Feb 3, 2023

    • mamcti

      Public
      Microscope Stage Automation for Multiple-location Chamber Time-lapse Imaging
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 21, 2022Dec 21, 2022
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