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@Workflomics Workflomics

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    17 repositories

    • workflomics-frontend

      Public
      Web interface for automated generation and benchmarking of computational workflows in bioinformatics.
      TypeScript
      •
      Apache License 2.0
      •5•4•15•4•Updated Jul 3, 2026Jul 3, 2026

    • restape

      Public
      RESTful API for the APE library
      Java
      •
      Apache License 2.0
      •3•1•16•7•Updated Jul 3, 2026Jul 3, 2026

    • clindaws

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 10, 2026May 10, 2026

    • ape

      Public
      Tool for automated generation of computational workflows.
      javaprogram-synthesisautomated-pipeline
      javaprogram-synthesisautomated-pipelineworkflow-synthesis
      Java
      •
      Apache License 2.0
      •10•21•10•2•Updated May 6, 2026May 6, 2026

    • pubmetric

      Public
      Library for benchmarking bioinformatics workflows using bibliographic networks.
      Jupyter Notebook
      •
      Apache License 2.0
      •1•1•6•3•Updated Jan 6, 2026Jan 6, 2026

    • ape_readthedocs

      Public
      The reository is used to provide detailed documentation on how to use the APE java library and its RESTful API.
      apereadthedocsworkflow-synthesis
      apereadthedocsworkflow-synthesisrestful-ape
      Python
      •
      Apache License 2.0
      •0•0•3•0•Updated Dec 4, 2025Dec 4, 2025

    • tools-and-domains

      Public
      Containers to package the required sofware for executing CWL workflows
      Common Workflow Language
      •
      Apache License 2.0
      •5•0•30•2•Updated Sep 25, 2025Sep 25, 2025

    • APE-Web

      Public
      The web interface for APE (Automated Pipeline Explorer)
      TypeScript
      •
      Apache License 2.0
      •0•3•0•0•Updated Jul 24, 2025Jul 24, 2025

    • .github

      Public
      0•0•0•0•Updated Jul 3, 2025Jul 3, 2025

    • workflomics-readthedocs

      Public
      The repository is used to provide detailed documentation on how to use the Workflomics web interface and its ecosystem.
      2•0•63•3•Updated Jun 11, 2025Jun 11, 2025

    • workflomics-benchmarker

      Public
      Library used to execute workflows (in CWL) and benchmark them as part of the Workflomics.
      Python
      •
      Apache License 2.0
      •0•0•4•0•Updated Jun 10, 2025Jun 10, 2025

    • DemoKit

      Public
      Data and instructions needed to run locally the Workflomics project
      Common Workflow Language
      •
      Apache License 2.0
      •1•0•0•1•Updated Nov 14, 2024Nov 14, 2024

    • domain-annotations

      Public
      Annotations of scientific domains available at the Workflomics platform
      Apache License 2.0
      •0•0•3•0•Updated Sep 8, 2024Sep 8, 2024

    • pubmetric-develipment

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • biohackathon_2023

      Public
      Project #4 in BioHackathon 2023 (Barcelona)
      TeX
      •0•0•0•0•Updated Dec 18, 2023Dec 18, 2023

    • designtime-bench-service

      Public archive
      RESTful API service for design-time benchmarking of workflows. The service focuses on aggregating tool specific benchmarks (available in bio.tools and OpenEBenc…
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 23, 2023Oct 23, 2023

    • WOMBAT-Pipelines

      Public
      R
      •
      MIT License
      •5•0•0•0•Updated Apr 5, 2023Apr 5, 2023
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