{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"edam-sandbox","owner":"edamontology","isFork":false,"description":"Miscellaneous files for test purposes","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":6,"issueCount":37,"starsCount":1,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-06T02:15:38.892Z"}},{"type":"Public","name":"edam-browser","owner":"edamontology","isFork":false,"description":"Stand-alone, lightweight, and fast JavaScript browser for EDAM and other ontologies","allTopics":["ontologies","ontology-search","edam","edam-annotations","ontology-services","ontology-engineering","edam-ontology","visualization-javascript-widget","visualization"],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":5,"issueCount":25,"starsCount":13,"forksCount":23,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-05T14:42:42.533Z"}},{"type":"Public","name":"edam2json-js","owner":"edamontology","isFork":false,"description":"Javascript library to convert EDAM to JSON/JSON-LD","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":1,"starsCount":3,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-05T14:38:07.912Z"}},{"type":"Public","name":"caseologue","owner":"edamontology","isFork":false,"description":"Validation tools for the EDAM ontology","allTopics":["quality-control","continuous-integration","ontology","sparql-query"],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":1,"issueCount":5,"starsCount":1,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-05T09:11:53.594Z"}},{"type":"Public","name":"edam-fu","owner":"edamontology","isFork":false,"description":"EDAM ontology formatting utility","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-04T16:03:24.121Z"}},{"type":"Public","name":"edamontology.github.io","owner":"edamontology","isFork":false,"description":"obsolete repo for the EDAM ontology website (redirects to edamontology.org)","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-04T09:23:24.230Z"}},{"type":"Public archive","name":"edamxpathvalidator","owner":"edamontology","isFork":false,"description":"Verification script for the EDAM ontology","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":15,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-04T09:00:39.322Z"}},{"type":"Public","name":"edamontology","owner":"edamontology","isFork":false,"description":"EDAM is an ontology of bioscientific data analysis and data management. EDAM concentrates on topics, operations, types of data, and data formats related to analysis, modelling, optimisation, and data life-cycle in biosciences, and in other research and science-based applications.","allTopics":["data","topic","topics","format","ontology","data-analysis","web-ontology-language","identifier","operation","edam","biohackeu20","edam-ontology","data-identifiers","science"],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":36,"issueCount":205,"starsCount":117,"forksCount":58,"license":"Creative Commons Attribution Share Alike 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-23T15:53:40.965Z"}},{"type":"Public","name":"edam-geo","owner":"edamontology","isFork":false,"description":"Extension of EDAM towards geo- and other sciences, including Earth and planetary sciences, climate science, ecology, public health, environmental monitoring, emergency management, etc. Everyone welcome to view & comment at https://webprotege.stanford.edu/#projects/69591619-4eda-4f03-9e7f-65b213038fe1/edit/Classes (free registration needed).","allTopics":["geospatial","gis","earth","humanitarian","geographic-data","ecology","biodiversity","climate-science","interdisciplinary","science"],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Creative Commons Attribution Share Alike 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T13:26:49.834Z"}},{"type":"Public","name":"edammap","owner":"edamontology","isFork":false,"description":"A tool for mapping various text input to EDAM ontology concepts","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":1,"starsCount":9,"forksCount":5,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T13:07:49.223Z"}},{"type":"Public","name":"pubfetcher","owner":"edamontology","isFork":false,"description":"A Java command-line tool and library to download and store publications with metadata by combining content from various online resources","allTopics":["scraping","doi","pubmed","publications","journals","europe-pmc"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":8,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T13:06:14.255Z"}},{"type":"Public","name":"edamontology.org","owner":"edamontology","isFork":false,"description":"Static EDAM website","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":3,"issueCount":7,"starsCount":0,"forksCount":4,"license":"Creative Commons Attribution Share Alike 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-13T17:29:54.830Z"}},{"type":"Public","name":"edam2json","owner":"edamontology","isFork":false,"description":"utility to export EDAM to various sorts of JSON formats (JSON-LD, bio.tools JSON)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-01T13:50:49.802Z"}},{"type":"Public","name":"edam-bioimaging","owner":"edamontology","isFork":false,"description":"Ontology of bioimage informatics operations, topics, types of data, and data formats. EDAM-Bioimaging is an extension of the EDAM ontology (edamontology.org) dedicated to bioimaging data analysis, and developed in an open collaboration including partners from NEUBIAS (neubias.org), COMULIS (comulis.eu), and ELIXIR (elixir-europe.org)..","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":2,"issueCount":18,"starsCount":8,"forksCount":8,"license":"Creative Commons Attribution Share Alike 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-27T22:09:02.383Z"}},{"type":"Public","name":"edamontologyDocs","owner":"edamontology","isFork":false,"description":"Documentation for EDAM.","allTopics":[],"primaryLanguage":{"name":"Makefile","color":"#427819"},"pullRequestCount":0,"issueCount":18,"starsCount":1,"forksCount":3,"license":"Creative Commons Attribution Share Alike 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-20T10:57:00.740Z"}},{"type":"Public","name":"edam-geo-wp-dump","owner":"edamontology","isFork":false,"description":"EDAM (\"Geo\"), raw download from WebProtégé","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-19T21:57:43.515Z"}},{"type":"Public","name":"edam-popovers","owner":"edamontology","isFork":false,"description":"A Firefox & Chrome extension that displays detailed information about EDAM concepts","allTopics":["firefox-addon","popover","ontologies","chrome-extensions","edam","ontology-services","edam-ontology"],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":11,"starsCount":4,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-15T14:38:02.971Z"}},{"type":"Public","name":"logoi","owner":"edamontology","isFork":false,"description":"Various suggestions of logoi for EDAM and related tools","allTopics":[],"primaryLanguage":null,"pullRequestCount":3,"issueCount":0,"starsCount":0,"forksCount":5,"license":"Creative Commons Attribution Share Alike 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-12-29T10:08:45.699Z"}},{"type":"Public","name":"jupyterlab-test","owner":"edamontology","isFork":false,"description":"Testing OWL tools in JupyterLab (in usegalaxy.eu)","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-18T15:34:18.731Z"}},{"type":"Public","name":"edam-geo-test.bak","owner":"edamontology","isFork":false,"description":"Extension of the EDAM ontology for geo-related concepts, including areas of Earth and planetary sciences, climate research, ecology, public health, etc.","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Creative Commons Attribution Share Alike 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-16T15:33:50.771Z"}},{"type":"Public","name":"edam-ontology.py","owner":"edamontology","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-03T13:29:13.924Z"}},{"type":"Public","name":"edam-stub-experiment","owner":"edamontology","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":2,"issueCount":1,"starsCount":0,"forksCount":1,"license":"Creative Commons Attribution Share Alike 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-17T23:02:47.365Z"}},{"type":"Public","name":"benten","owner":"edamontology","isFork":true,"description":"A language server for Common Workflow Language","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":10,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-11T23:51:13.372Z"}},{"type":"Public","name":"debtag2edam2debtags","owner":"edamontology","isFork":true,"description":"The EDAM ontology for bioinformatics tools and services should be come compatible with the Debtags and vice versa. This project starts out with adding EDAM references to the debtags volcabulary export file.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-03-27T17:43:04.112Z"}},{"type":"Public","name":"edam-playground","owner":"edamontology","isFork":false,"description":"Slides, swings, and sandbox ontology","allTopics":["sandbox","slides","edam","swings"],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Creative Commons Attribution Share Alike 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-03-07T15:11:48.945Z"}}],"repositoryCount":25,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"edamontology repositories"}