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    104 repositories

    • Jupyter Notebook
      MIT License
      0000Updated Jun 20, 2024Jun 20, 2024
    • LatentDAG

      Public
      Jupyter Notebook
      0000Updated Jun 18, 2024Jun 18, 2024
    • ML-Bench

      Public
      The Official Repo of ML-Bench: Evaluating Large Language Models and Agents for Machine Learning Tasks on Repository-Level Code (https://arxiv.org/abs/2311.09835)
      Python
      MIT License
      618000Updated Jun 16, 2024Jun 16, 2024
    • BioCoder

      Public
      Jupyter Notebook
      103200Updated Jun 16, 2024Jun 16, 2024
    • 12300Updated Jun 15, 2024Jun 15, 2024
    • LICENSE

      Public
      License that applies to Gerstein Lab repositories.
      0000Updated Jun 10, 2024Jun 10, 2024
    • PPT

      Public
      Jupyter Notebook
      0000Updated Jun 6, 2024Jun 6, 2024
    • MedAgents

      Public
      Python
      1918200Updated May 27, 2024May 27, 2024
    • MolLM

      Public
      A Unified Language Model to Integrate Biomedical Text with 2D and 3D Molecular Representations
      Python
      11100Updated May 18, 2024May 18, 2024
    • chronODE

      Public
      Jupyter Notebook
      0200Updated Apr 30, 2024Apr 30, 2024
    • Integrative Analyses across 388 human brain samples at single-cell resolution
      R
      Other
      2600Updated Mar 21, 2024Mar 21, 2024
    • PLIGHT

      Public
      Privacy Leakage through Inference across Genotypic HMM Trajectories
      Python
      Other
      0100Updated Mar 20, 2024Mar 20, 2024
    • fmgene

      Public
      MIT License
      0000Updated Mar 17, 2024Mar 17, 2024
    • MOBI

      Public
      Shell
      MIT License
      0100Updated Jan 31, 2024Jan 31, 2024
    • Musevo

      Public
      MATLAB
      MIT License
      0000Updated Jan 25, 2024Jan 25, 2024
    • cbb752b23

      Public
      CSS
      0000Updated Jan 16, 2024Jan 16, 2024
    • ThermoNet

      Public
      ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep 3D convolutional neural networks.
      Python
      GNU General Public License v3.0
      2010310Updated Dec 20, 2023Dec 20, 2023
    • ABCD

      Public
      Python
      0100Updated Nov 2, 2023Nov 2, 2023
    • idash23bc

      Public
      Solution to Track 2 of the 2023 iDASH competition
      JavaScript
      0000Updated Nov 1, 2023Nov 1, 2023
    • Python
      54230Updated Oct 9, 2023Oct 9, 2023
    • This project applies dimensionality reduction to tabular data and generates applications for visualizing the results.
      R
      0200Updated Oct 8, 2023Oct 8, 2023
    • MIMIR

      Public
      demo
      Python
      0000Updated Aug 9, 2023Aug 9, 2023
    • Python
      1100Updated Jul 15, 2023Jul 15, 2023
    • HTML
      0000Updated Jul 10, 2023Jul 10, 2023
    • MEDIQA-Chat-2023 GersteinLab solution
      Jupyter Notebook
      0200Updated May 9, 2023May 9, 2023
    • Copy of REliable PIcking by Consensus (REPIC)
      Python
      BSD 3-Clause "New" or "Revised" License
      2000Updated Apr 6, 2023Apr 6, 2023
    • exceRpt

      Public
      Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
      HTML
      GNU General Public License v3.0
      252100Updated Apr 5, 2023Apr 5, 2023
    • idash22bc

      Public
      Solution to track 1 of iDASH 2022 secure genome analysis competition
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      0200Updated Dec 16, 2022Dec 16, 2022
    • 3v: Voss Volume Voxelator
      C++
      GNU General Public License v3.0
      6000Updated Dec 13, 2022Dec 13, 2022
    • entexBERT

      Public
      The DNABERT model for ENTEx
      Python
      0500Updated Oct 7, 2022Oct 7, 2022