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    136 repositories

    • ASTRO

      Public
      Python
      •5•6•0•0•Updated Dec 12, 2025Dec 12, 2025

    • PathwayGAT

      Public
      A GAT-based framework integrating multi-layer information with a pathway network
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 3, 2025Dec 3, 2025

    • cbb7520b26

      Public
      CSS
      •1•0•0•0•Updated Nov 26, 2025Nov 26, 2025

    • BC-Design

      Public
      BC-Design: A Biochemistry-Aware Framework for High-Precision Inverse Protein Folding https://www.biorxiv.org/content/10.1101/2024.10.28.620755v2
      protein-structurecomputational-biologyproteinprotein-surfaceinverse-design
      Python
      •
      Apache License 2.0
      •2•19•0•0•Updated Nov 24, 2025Nov 24, 2025

    • CellForge

      Public
      Python
      •15•122•6•0•Updated Nov 13, 2025Nov 13, 2025

    • HISNUC

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 11, 2025Nov 11, 2025

    • MedAgents-2

      Public
      Python
      •
      Apache License 2.0
      •1•3•1•0•Updated Oct 31, 2025Oct 31, 2025

    • HEPRS

      Public
      Go
      •
      MIT License
      •1•0•0•0•Updated Oct 30, 2025Oct 30, 2025

    • medagents-benchmark

      Public
      MedAgentsBench: Benchmarking Thinking Models and Agent Frameworks for Complex Medical Reasoning
      Jupyter Notebook
      •
      MIT License
      •8•67•7•0•Updated Oct 10, 2025Oct 10, 2025

    • brainPgene

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 24, 2025Aug 24, 2025

    • HISNUC-test

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 20, 2025Aug 20, 2025

    • LocAgent

      Public
      [ACL 2025] Graph-guided agentic framework for code localization https://arxiv.org/abs/2503.09089
      Python
      •
      Apache License 2.0
      •82•554•11•0•Updated Aug 17, 2025Aug 17, 2025

    • chronODE

      Public
      Python
      •0•5•0•0•Updated Aug 14, 2025Aug 14, 2025

    • Struc-Bench

      Public
      [NAACL 2024] Struc-Bench: Are Large Language Models Good at Generating Complex Structured Tabular Data? https://aclanthology.org/2024.naacl-short.2/
      llm
      Python
      •7•55•7•0•Updated Jul 31, 2025Jul 31, 2025

    • BioCoder

      Public
      BioCoder: A Benchmark for Bioinformatics Code Generation with Large Language Models https://arxiv.org/abs/2308.16458
      Jupyter Notebook
      •15•52•0•0•Updated Jul 31, 2025Jul 31, 2025

    • ChemAgent

      Public
      [ICLR 2025]ChemAgent: Self-updating Library in Large Language Models Improves Chemical Reasoning https://arxiv.org/abs/2501.06590
      Python
      •11•78•3•0•Updated Jul 31, 2025Jul 31, 2025

    • ML-Bench

      Public
      ML-Bench: Evaluating Large Language Models and Agents for Machine Learning Tasks on Repository-Level Code (https://arxiv.org/abs/2311.09835)
      code-generationgpt-4llm
      Python
      •
      MIT License
      •9•306•0•0•Updated Jul 31, 2025Jul 31, 2025

    • shiny-dim-reduction

      Public
      This project applies dimensionality reduction to tabular data and generates applications for visualizing the results.
      R
      •0•2•0•0•Updated Jul 27, 2025Jul 27, 2025

    • cbb752b25

      Public
      CSS
      •1•1•0•0•Updated May 19, 2025May 19, 2025

    • QVAE

      Public
      Python
      •
      MIT License
      •0•0•1•0•Updated Mar 24, 2025Mar 24, 2025

    • epiPgene

      Public
      0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • cbb752b16

      Public
      CBB752 (Spr. '16) - Bioinformatics: Practical Application of Data Mining & Simulation
      HTML
      •0•0•0•0•Updated Feb 19, 2025Feb 19, 2025

    • .github

      Public
      This is the repo for the public organization profile.
      MIT License
      •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

    • cbb752b23

      Public
      CSS
      •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

    • Bay2Ctrls

      Public
      R
      •
      Other
      •0•0•0•0•Updated Dec 27, 2024Dec 27, 2024

    • MOBI

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated Dec 27, 2024Dec 27, 2024

    • ABCD

      Public
      R
      •0•3•0•0•Updated Dec 16, 2024Dec 16, 2024

    • fmgene

      Public
      0•1•0•0•Updated Dec 15, 2024Dec 15, 2024

    • cbb752b20

      Public
      CSS
      •0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • GenAI4Drug

      Public
      [Briefings in Bioinformatics] A Survey of Generative AI for de novo Drug Design
      moleculeproteindrug-discoverygenai
      6•94•0•0•Updated Nov 30, 2024Nov 30, 2024