{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"gkno.github.com","owner":"gkno","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":3,"starsCount":2,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-11-11T20:59:02.454Z"}},{"type":"Public","name":"gkno_launcher","owner":"gkno","isFork":false,"description":"The gkno launcher for executing tools or pipelines","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":23,"starsCount":32,"forksCount":7,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-01-17T18:53:28.581Z"}},{"type":"Public","name":"resources-homo_sapiens_grch38","owner":"gkno","isFork":false,"description":"Human genome reference build GRCh38/hg38","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-09-28T21:36:35.905Z"}},{"type":"Public","name":"resources-homo_sapiens_grch37","owner":"gkno","isFork":false,"description":"Human genome reference build GRCh37/hg19","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-09-28T21:36:12.950Z"}},{"type":"Public","name":"Complete-striped-Smith-Waterman-library","owner":"gkno","isFork":true,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":112,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-07-19T18:18:17.754Z"}},{"type":"Public","name":"vcflib","owner":"gkno","isFork":true,"description":"a simple C++ library for parsing and manipulating VCF files","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":219,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-06-24T10:38:30.885Z"}},{"type":"Public","name":"snpEff","owner":"gkno","isFork":false,"description":"Mirror of snpEff variant annotation and effect prediction tool.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"GNU Lesser General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-11-24T22:21:47.339Z"}},{"type":"Public","name":"resources-tutorial","owner":"gkno","isFork":false,"description":"gkno resources for use in tutorials","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-11-12T22:45:48.033Z"}},{"type":"Public","name":"vt","owner":"gkno","isFork":true,"description":"A tool set for short variant discovery in genetic sequence data.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":42,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-11-03T17:29:23.062Z"}},{"type":"Public","name":"freebayes","owner":"gkno","isFork":true,"description":"Bayesian haplotype-based polymorphism discovery and genotyping.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":259,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-08-30T22:17:51.382Z"}},{"type":"Public","name":"resources-homo_sapiens","owner":"gkno","isFork":false,"description":"gkno resources for Homo sapiens ","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-06-05T14:11:55.776Z"}},{"type":"Public","name":"genomicRegions","owner":"gkno","isFork":false,"description":"Scripts for generating genomic regions for use with other tools.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-04-27T12:35:23.522Z"}},{"type":"Public","name":"wham","owner":"gkno","isFork":true,"description":"All-things-BAM","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":25,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-04-21T14:21:46.780Z"}},{"type":"Public","name":"samblaster","owner":"gkno","isFork":true,"description":"samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":31,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-12-23T19:43:35.054Z"}},{"type":"Public","name":"RUFUS","owner":"gkno","isFork":true,"description":"RUFUS k-mer based genomic variant detection ","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":13,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-12-07T23:08:22.962Z"}},{"type":"Public","name":"gemini","owner":"gkno","isFork":true,"description":"a lightweight db framework for disease and population genetics.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":118,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-11-17T14:00:57.244Z"}},{"type":"Public","name":"bedtools2","owner":"gkno","isFork":true,"description":"A powerful toolset for genome arithmetic.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":283,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-11-14T14:46:24.703Z"}},{"type":"Public","name":"blast","owner":"gkno","isFork":false,"description":"Helper repo for fetching NCBI BLAST binaries (<a href=\"http://blast.ncbi.nlm.nih.gov/Blast.cgi\" rel=\"nofollow\">http://blast.ncbi.nlm.nih.gov/Blast.cgi</a>)","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-11-11T05:46:08.469Z"}},{"type":"Public","name":"samtools","owner":"gkno","isFork":true,"description":"Tools (written in C using htslib) for manipulating next-generation sequencing data","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":570,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-11-11T00:40:08.943Z"}},{"type":"Public","name":"htslib","owner":"gkno","isFork":true,"description":"C library for high-throughput sequencing data formats","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":446,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-11-10T10:43:56.363Z"}},{"type":"Public","name":"configurationClass","owner":"gkno","isFork":true,"description":"Library for handling tool and pipeline configuration files","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-10-28T15:21:11.875Z"}},{"type":"Public","name":"parseSequenceIndex","owner":"gkno","isFork":false,"description":"Parse a 1000G sequence index and produce files for use with gkno","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-10-12T20:35:43.896Z"}},{"type":"Public","name":"lumpy-sv","owner":"gkno","isFork":true,"description":"lumpy: a general probabilistic framework for structural variant discovery","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":118,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-10-03T19:03:50.698Z"}},{"type":"Public","name":"glfFlex","owner":"gkno","isFork":true,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-09-24T14:08:44.458Z"}},{"type":"Public","name":"pindel","owner":"gkno","isFork":true,"description":"Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"SystemVerilog","color":"#DAE1C2"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":90,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-08-27T21:26:35.101Z"}},{"type":"Public","name":"genomeStrip","owner":"gkno","isFork":false,"description":"Mirror of Genome STRiP from the Broad Institute","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-06-19T13:22:38.213Z"}},{"type":"Public","name":"bwa","owner":"gkno","isFork":true,"description":"Burrow-Wheeler Aligner","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":544,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-06-04T15:15:01.665Z"}},{"type":"Public","name":"Tangram","owner":"gkno","isFork":true,"description":"Fast Structural Variation Detection Toolbox","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":6,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-06-04T11:36:05.771Z"}},{"type":"Public","name":"scripts","owner":"gkno","isFork":false,"description":"A set of scripts available within gkno","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-06-03T09:21:54.301Z"}},{"type":"Public","name":"mutatrix","owner":"gkno","isFork":true,"description":"genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":5,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-05-23T16:38:49.092Z"}}],"repositoryCount":42,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"mirror","text":"Mirrors"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}