{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"mapNN","owner":"kr-colab","isFork":false,"description":"neural network for estimating demographic maps from SNPs","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":5,"forksCount":1,"license":"MIT License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8,4,6,7,5,3,4,1,0,1,1,0,0,1,1,0,8,0,0,3,0,0,0,0,0,0,0,2,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T16:42:25.593Z"}},{"type":"Public","name":"diploSHIC","owner":"kr-colab","isFork":false,"description":"feature-based deep learning for the identification of selective sweeps","allTopics":["cnn","population-genetics","selective-sweeps","deep-learning","tensorflow"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":6,"starsCount":49,"forksCount":14,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-09T22:29:09.660Z"}},{"type":"Public","name":"spatial_sims_standard","owner":"kr-colab","isFork":false,"description":"standardizing spatial simulation slim scripts with a template","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-08T19:09:37.931Z"}},{"type":"Public","name":"popvae","owner":"kr-colab","isFork":false,"description":"genotype dimensionality reduction with a VAE","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":3,"starsCount":39,"forksCount":9,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-23T01:29:31.443Z"}},{"type":"Public","name":"ReLERNN","owner":"kr-colab","isFork":false,"description":"Recombination Landscape Estimation using Recurrent Neural Networks","allTopics":["deep-learning","recurrent-neural-networks","population-genomics","recombination"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":7,"starsCount":46,"forksCount":11,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-13T17:06:05.768Z"}},{"type":"Public","name":"disperseNN2","owner":"kr-colab","isFork":false,"description":"estimating dispersal distance from georeferenced polymorphisms","allTopics":["deep-learning","population-genetics","dispersal"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":6,"starsCount":3,"forksCount":2,"license":"MIT License","participation":[0,23,21,47,36,76,28,3,0,0,1,0,0,0,0,0,0,0,0,0,0,7,1,0,0,0,0,0,1,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-01T23:14:35.389Z"}},{"type":"Public","name":"greatapes_sims","owner":"kr-colab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":2,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-05T21:12:43.106Z"}},{"type":"Public","name":"disperseNN","owner":"kr-colab","isFork":false,"description":"Estimating dispersal using deep neural networks","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":6,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-29T14:34:33.803Z"}},{"type":"Public","name":"product-space-FEM","owner":"kr-colab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":4,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-09T20:58:38.569Z"}},{"type":"Public","name":"locator","owner":"kr-colab","isFork":false,"description":"deep learning prediction of geographic location from individual genome sequences","allTopics":["deep-learning","geography","population-genetics"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":8,"starsCount":46,"forksCount":17,"license":"Other","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-12T17:50:41.262Z"}},{"type":"Public","name":"popgenDL_crashcourse","owner":"kr-colab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-27T15:25:56.179Z"}},{"type":"Public","name":"FILET","owner":"kr-colab","isFork":false,"description":"Software for detecting introgression using supervised machine learning","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":1,"starsCount":18,"forksCount":5,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-21T03:15:08.057Z"}},{"type":"Public","name":"discoal","owner":"kr-colab","isFork":false,"description":"discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples","allTopics":["recombination","simulation-model","admixture-events","selective-sweeps","demographic-changes"],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":0,"issueCount":2,"starsCount":47,"forksCount":10,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-01T20:10:50.513Z"}},{"type":"Public","name":"bio610_popgen","owner":"kr-colab","isFork":false,"description":"Bio 610 module on population genetics ","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-11T16:48:23.912Z"}},{"type":"Public","name":"colab_wiki","owner":"kr-colab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-02-24T16:41:41.483Z"}},{"type":"Public","name":"shIC","owner":"kr-colab","isFork":false,"description":"The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":1,"starsCount":14,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-02-02T00:21:13.255Z"}},{"type":"Public","name":"spaceness","owner":"kr-colab","isFork":false,"description":"Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":7,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-04-10T17:24:14.486Z"}},{"type":"Public","name":"snakemake_example","owner":"kr-colab","isFork":false,"description":"snakemake workflow example for msprime","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-11-01T22:58:53.624Z"}},{"type":"Public","name":"msUtils","owner":"kr-colab","isFork":false,"description":"A collection of C utilities for working with ms-formatted output files. Code is fast, flexible, and has many stats implemented","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-06-06T23:49:11.755Z"}},{"type":"Public","name":"im_clam","owner":"kr-colab","isFork":false,"description":"package for exact calculation of the joint site frequency spectrum under Isolation with Migration models as described in Kern and Hey (2017) <a href=\"http://www.genetics.org/content/207/1/241\" rel=\"nofollow\">http://www.genetics.org/content/207/1/241</a>","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-11-24T19:20:22.230Z"}},{"type":"Public","name":"stairwayPlotMisorient","owner":"kr-colab","isFork":false,"description":"Liu and Fu's StairwayPlot program modified to estimate a mispolarization parameter","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":"GNU Lesser General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-11-29T22:17:16.020Z"}},{"type":"Public","name":"popCons","owner":"kr-colab","isFork":false,"description":"constrained elements predicted from population genomic data","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-10-07T20:09:09.965Z"}},{"type":"Public","name":"softShoulders","owner":"kr-colab","isFork":false,"description":"Contains supplementary data from the Schrider et al. (2015) \"Soft Shoulders\" paper.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-02-06T03:17:22.451Z"}}],"repositoryCount":23,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}