{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"amid","owner":"neuro-ml","isFork":false,"description":"Awesome Medical Imaging Datasets","topicNames":["python","medical-imaging","datasets"],"topicsNotShown":0,"allTopics":["python","medical-imaging","datasets"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":5,"starsCount":33,"forksCount":7,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T17:47:32.833Z"}},{"type":"Public","name":"connectome","owner":"neuro-ml","isFork":false,"description":"A library for datasets containing heterogeneous data","topicNames":["python","pipelines","data-processing"],"topicsNotShown":0,"allTopics":["python","pipelines","data-processing"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":12,"starsCount":12,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-14T19:11:45.031Z"}},{"type":"Public","name":"imops","owner":"neuro-ml","isFork":false,"description":"Efficient parallelizable algorithms for multidimensional arrays to speed up your data pipelines","topicNames":["python","parallel-computing","image-processing"],"topicsNotShown":0,"allTopics":["python","parallel-computing","image-processing"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":13,"starsCount":19,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-25T16:44:59.003Z"}},{"type":"Public","name":"thunder","owner":"neuro-ml","isFork":false,"description":"🌩️ The Deep Learning framework based on Lightning","topicNames":["experiments","pytorch-lightning","python","machine-learning","deep-learning","pytorch"],"topicsNotShown":0,"allTopics":["experiments","pytorch-lightning","python","machine-learning","deep-learning","pytorch"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":28,"starsCount":8,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-23T15:27:49.262Z"}},{"type":"Public","name":"bev","owner":"neuro-ml","isFork":false,"description":"Flexible version control for files and folders","topicNames":["data","storage","version-control","python","git"],"topicsNotShown":0,"allTopics":["data","storage","version-control","python","git"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":7,"forksCount":2,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-08T13:46:55.703Z"}},{"type":"Public","name":"tarn","owner":"neuro-ml","isFork":false,"description":"An insanely customizable framework for key-value storage 💾","topicNames":["python","memoization","storage","cache","persistent","datalake"],"topicsNotShown":0,"allTopics":["python","memoization","storage","cache","persistent","datalake"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":1,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-07T15:38:26.838Z"}},{"type":"Public","name":"dicom-csv","owner":"neuro-ml","isFork":false,"description":"Utils for gathering, aggregation and handling metadata from DICOM files","topicNames":["dicom","python"],"topicsNotShown":0,"allTopics":["dicom","python"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":6,"starsCount":7,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-06T09:45:57.796Z"}},{"type":"Public","name":"deep_pipe","owner":"neuro-ml","isFork":false,"description":"A collection of tools for deep learning experiments","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":2,"starsCount":37,"forksCount":9,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-03T08:57:22.228Z"}},{"type":"Public","name":"static-yoga","owner":"neuro-ml","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-07T14:07:01.968Z"}},{"type":"Public","name":"curve-detection","owner":"neuro-ml","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-23T14:48:32.637Z"}},{"type":"Public","name":"anchor-free-genant","owner":"neuro-ml","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-30T19:06:42.650Z"}},{"type":"Public","name":"straighten","owner":"neuro-ml","isFork":false,"description":"Interpolation along multidimensional curves","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":8,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-08T17:07:57.488Z"}},{"type":"Public","name":"low-resolution","owner":"neuro-ml","isFork":false,"description":"Code release for the paper B. Shirokikh, A. Shevtsov et al. \"Accelerating 3D Medical Image Segmentation by Adaptive Small-Scale Target Localization\"","topicNames":["medical-imaging","lung-cancer-detection","medical-image-analysis","medical-image-segmentation","metastases","deep-learning"],"topicsNotShown":0,"allTopics":["medical-imaging","lung-cancer-detection","medical-image-analysis","medical-image-segmentation","metastases","deep-learning"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-10-30T17:10:57.340Z"}},{"type":"Public","name":"pycharm-connectome-support","owner":"neuro-ml","isFork":false,"description":"Connectome Support for PyCharm","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-30T16:24:52.719Z"}},{"type":"Public","name":"domain_shift_anatomy","owner":"neuro-ml","isFork":false,"description":"Code release for the paper I. Zakazov, B. Shirokikh et al. \"Anatomy of Domain Shift Impact on U-Net Layers in MRI Segmentation\" (MICCAI 2021, oral).","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":13,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-07-19T10:15:13.919Z"}},{"type":"Public","name":"connectome-tutorials","owner":"neuro-ml","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-07-12T14:54:38.469Z"}},{"type":"Public","name":"COVID-19-Triage","owner":"neuro-ml","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":6,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-04-25T10:04:47.145Z"}},{"type":"Public","name":"vertebral-fractures-severity","owner":"neuro-ml","isFork":false,"description":"Repository for the paper \"Keypoints Localization for Joint Vertebra Detection and Fracture Severity Quantification\"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":8,"forksCount":1,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-03-23T08:54:39.497Z"}},{"type":"Public","name":"inverse_weighting","owner":"neuro-ml","isFork":false,"description":"Code release for the paper B. Shirokikh, A. Shevtsov et al. \"Universal Loss Reweighting to Balance Lesion Size Inequality in 3D Medical Image Segmentation\" (MICCAI 2020, oral).","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":1,"starsCount":24,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-09-13T09:10:14.430Z"}},{"type":"Public","name":"dpipe_tutorial_notebooks","owner":"neuro-ml","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-06-02T15:54:55.984Z"}},{"type":"Public","name":"midline-shift-detection","owner":"neuro-ml","isFork":false,"description":"Full code for the paper \"Incorporating Task-Specific Structural Knowledge into CNNs for Brain Midline Shift Detection\"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":10,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-08-19T18:16:01.592Z"}},{"type":"Public","name":"dpipe_mnist","owner":"neuro-ml","isFork":false,"description":"A short deep_pipe example","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-11-20T14:16:58.022Z"}},{"type":"Public","name":"brats","owner":"neuro-ml","isFork":false,"description":"BraTS competition","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-10-02T17:43:50.795Z"}},{"type":"Public","name":"edr-gp","owner":"neuro-ml","isFork":false,"description":"A library for sparse Effective (functional) Dimensionality Reduction via Gaussian Processes","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":9,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-06-28T09:48:13.282Z"}},{"type":"Public","name":"BIDSTransformers","owner":"neuro-ml","isFork":false,"description":"BIDS Transformers for neuroimaging data preprocessing based on BIDS and sklearn architecture","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-09-01T21:51:30.969Z"}},{"type":"Public","name":"reskit","owner":"neuro-ml","isFork":false,"description":"A library for creating and curating reproducible pipelines for scientific and industrial machine learning","topicNames":["reproducible-research","scikit-learn","reproducible-experiments","python","pipeline","grid-search","data-preparation","prepare-data"],"topicsNotShown":0,"allTopics":["reproducible-research","scikit-learn","reproducible-experiments","python","pipeline","grid-search","data-preparation","prepare-data"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":13,"starsCount":27,"forksCount":7,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-07-20T14:22:25.012Z"}},{"type":"Public","name":"resnet_cnn_mri_adni","owner":"neuro-ml","isFork":false,"description":"Code for Residual and Plain Convolutional Neural Networks for 3D Brain MRI Classification paper","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":5,"starsCount":142,"forksCount":47,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-06-20T16:43:05.992Z"}},{"type":"Public","name":"scipy_proceedings","owner":"neuro-ml","isFork":true,"description":"Tools used to generate the SciPy conference proceedings","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":472,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-06-19T13:01:44.084Z"}},{"type":"Public","name":"structural-connectome-validation-pairwise","owner":"neuro-ml","isFork":false,"description":"Repository for paper 'Structural Connectome Validation Using Pairwise Classification'","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-03-30T23:44:13.377Z"}},{"type":"Public","name":"PRNI2016","owner":"neuro-ml","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-02-08T04:16:34.592Z"}}],"repositoryCount":30,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}