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    38 repositories

    • query-tool

      Public
      User interface for searching across Neurobagel graph
      TypeScript
      •
      MIT License
      •4•4•44•4•Updated Feb 9, 2026Feb 9, 2026

    • ui

      Public
      TypeScript
      •
      MIT License
      •0•0•7•2•Updated Feb 9, 2026Feb 9, 2026

    • bagel-cli

      Public
      Command line tool for Neurobagel data parsing and annotation
      Python
      •
      MIT License
      •5•4•29•4•Updated Feb 9, 2026Feb 9, 2026

    • upptime

      Public
      Status dashboard of services hosted directly by Neurobagel
      Markdown
      •
      MIT License
      •0•0•2•0•Updated Feb 9, 2026Feb 9, 2026

    • annotation-tool

      Public
      TypeScript
      •
      MIT License
      •1•1•65•7•Updated Feb 8, 2026Feb 8, 2026

    • react-bagel

      Public template
      TypeScript
      •
      MIT License
      •0•0•1•4•Updated Feb 7, 2026Feb 7, 2026

    • communities

      Public
      Scripts and configuration files for Neurobagel communities
      Python
      •
      MIT License
      •0•0•6•0•Updated Feb 6, 2026Feb 6, 2026

    • api

      Public
      Python
      •
      MIT License
      •5•5•25•3•Updated Feb 5, 2026Feb 5, 2026

    • documentation

      Public
      The neurobagel documentation
      JavaScript
      •
      MIT License
      •8•15•31•3•Updated Feb 3, 2026Feb 3, 2026

    • recipes

      Public
      Configuration files for a Neurobagel deployment.
      Shell
      •
      MIT License
      •1•1•16•2•Updated Jan 29, 2026Jan 29, 2026

    • federation-api

      Public
      REST API for query federation over multiple Neurobagel graph databases
      Python
      •
      MIT License
      •0•0•15•1•Updated Jan 29, 2026Jan 29, 2026

    • configure-nb

      Public
      Configuration wizard for a Neurobagel deployment.
      Python
      •
      MIT License
      •0•0•4•0•Updated Jan 28, 2026Jan 28, 2026

    • py-app-template

      Public template
      Template for Neurobagel Python app.
      MIT License
      •0•2•0•0•Updated Jan 27, 2026Jan 27, 2026

    • workflows

      Public
      MIT License
      •1•0•9•1•Updated Jan 27, 2026Jan 27, 2026

    • neurobagel_examples

      Public
      Example files using the neurobagel schema
      MIT License
      •0•0•0•1•Updated Jan 24, 2026Jan 24, 2026

    • bump-dictionary

      Public
      Bump Neurobagel data dictionaries to the latest dictionary schema.
      Python
      •
      MIT License
      •0•0•2•0•Updated Jan 20, 2026Jan 20, 2026

    • openneuro-annotations

      Public
      MIT License
      •0•1•3•0•Updated Jan 15, 2026Jan 15, 2026

    • dev-docs

      Public
      Documentation for people developing neurobagel
      0•0•4•0•Updated Jan 5, 2026Jan 5, 2026

    • menu

      Public
      Resources for Neurobagel query services.
      MIT License
      •1•0•0•0•Updated Dec 16, 2025Dec 16, 2025

    • digest

      Public
      Web dashboard for neuroimaging-derived and phenotypic datasets
      Python
      •
      MIT License
      •2•3•24•1•Updated Nov 28, 2025Nov 28, 2025

    • tools

      Public
      Other helpful tools for interfacing with Neurobagel
      Python
      •
      MIT License
      •0•0•2•1•Updated Nov 26, 2025Nov 26, 2025

    • bagelschema

      Public
      The schema for neurobagel metadata
      MIT License
      •0•0•1•0•Updated Nov 20, 2025Nov 20, 2025

    • legacy_annotation_tool

      Public archive
      linked-datafair-principles
      JavaScript
      •
      MIT License
      •8•3•0•0•Updated Nov 20, 2025Nov 20, 2025

    • planning

      Public
      MIT License
      •0•0•69•1•Updated Nov 20, 2025Nov 20, 2025

    • bulk_annotations

      Public
      Retroactively annotate a large number of BIDS datasets at once
      Python
      •
      MIT License
      •1•0•1•2•Updated Nov 20, 2025Nov 20, 2025

    • browbids

      Public
      Bids in a vue app would be nice
      Vue
      •
      MIT License
      •0•3•0•0•Updated Nov 20, 2025Nov 20, 2025

    • .github

      Public
      Content for the Neurobagel Github organization page
      MIT License
      •1•0•1•0•Updated May 29, 2025May 29, 2025

    • cogatlas_to_snomed_conversion

      Public
      Archive repo for code we used to convert assessment terms from cogatlas to snomed
      Python
      •0•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • vocab-handling

      Public
      Code for processing external vocabularies for Neurobagel
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 31, 2025Mar 31, 2025

    • dataget

      Public
      get data
      Shell
      •
      MIT License
      •0•0•2•0•Updated Feb 6, 2025Feb 6, 2025