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@oxpig Oxford Protein Informatics Group

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    Repositories list

    72 repositories

    • Tz_her2_affinity_and_beyond

      Public
      Design and refine high affinity antibody libraries
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•9•0•0•Updated Sep 4, 2026Sep 4, 2026

    • ANARCII

      Public
      A language model suite for numbering antigen receptor sequences.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •9•63•14•7•Updated Aug 30, 2026Aug 30, 2026

    • nispo

      Public
      NISPO: Nomenclature Inference for Structures, Powered by OPSIN
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•18•1•0•Updated Aug 23, 2026Aug 23, 2026

    • AntiDIF

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•9•0•0•Updated Aug 17, 2026Aug 17, 2026

    • syndirella

      Public
      Generates and scores synthetically tractable elaborations from fragment screens
      Python
      •
      MIT License
      •5•21•7•0•Updated Aug 3, 2026Aug 3, 2026

    • FlashABB

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•20•1•0•Updated Jul 30, 2026Jul 30, 2026

    • MolJSON

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•15•0•0•Updated Jul 20, 2026Jul 20, 2026

    • STCRpy

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•19•27•5•Updated Jun 11, 2026Jun 11, 2026

    • topological-pretraining

      Public
      Experiments for investigating improving QSAR prediction of GINs by pre-training on Extended-Connectivity Fingerprints.
      machine-learningcheminformaticsdrug-discovery
      machine-learningcheminformaticsdrug-discovery
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 20, 2026May 20, 2026

    • MolJSON-data

      Public
      Data and analysis for MolJSON paper
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated May 5, 2026May 5, 2026

    • Creoptix_Fitting

      Public
      Analysis and fitting of data from the Creoptix experimental setup for protein-surface binding studies at Diamond Light Source (part of OpenBind).
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•6•0•Updated Apr 20, 2026Apr 20, 2026

    • ABB4

      Public
      Antibody structure prediction model for sampling conformational ensembles
      Python
      •
      MIT License
      •2•21•0•0•Updated Apr 14, 2026Apr 14, 2026

    • antibodymd

      Public
      repo for user friendly MD simulations
      Python
      •1•2•0•0•Updated Apr 8, 2026Apr 8, 2026

    • LICHEN

      Public
      Light-chain Immunoglobulin sequence generation Conditioned on the Heavy chain and Experimental Needs
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•6•0•0•Updated Mar 31, 2026Mar 31, 2026

    • RLDiff

      Public
      Python
      •
      MIT License
      •1•14•1•0•Updated Mar 31, 2026Mar 31, 2026

    • github-readme-stats

      Public
      Dynamically generated stats for github readmes
      JavaScript
      •
      MIT License
      •37k•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • ChemIQ

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •5•37•0•0•Updated Mar 26, 2026Mar 26, 2026

    • AEV-PLIG

      Public
      Python
      •
      Other
      •19•33•0•1•Updated Feb 27, 2026Feb 27, 2026

    • cond-semla

      Public
      Python
      •0•7•0•0•Updated Feb 11, 2026Feb 11, 2026

    • AntiFold

      Public
      Improved antibody structure-based design using inverse folding
      antibodyantibody-design
      antibodyantibody-design
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •32•175•3•0•Updated Dec 9, 2025Dec 9, 2025

    • CDR_MD_simulations

      Public
      Supporting material and code for the manuscript: "Cagiada M, et.al., Uncovering the flexibility of CDR loops in antibodies and TCRs through large-scale molecula…
      Jupyter Notebook
      •
      MIT License
      •1•3•0•0•Updated Nov 28, 2025Nov 28, 2025

    • TNP

      Public
      Therapeutic Nanobody Profiler
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•43•0•5•Updated Nov 11, 2025Nov 11, 2025

    • ImmuneBuilder

      Public
      Predict the structure of immune receptor proteins
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •56•189•0•5•Updated Nov 11, 2025Nov 11, 2025

    • Humatch

      Public
      Fast, gene-specific joint humanisation of antibody heavy and light chains.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•26•0•0•Updated Nov 11, 2025Nov 11, 2025

    • intro-smolecules-design

      Public
      An introduction to small molecule drug design with practicals
      Jupyter Notebook
      •1•14•0•0•Updated Nov 11, 2025Nov 11, 2025

    • HeavyBuilder2

      Public
      A web app for HeavyBuilder2
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 20, 2025Oct 20, 2025

    • ITsFlexible

      Public
      Prediction of Antibody CDR and protein loop flexibility
      Python
      •
      MIT License
      •6•17•0•0•Updated Sep 17, 2025Sep 17, 2025

    • PLAbDab_nano

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Aug 15, 2025Aug 15, 2025

    • attending-to-distance

      Public
      Python
      •0•4•0•0•Updated Jul 24, 2025Jul 24, 2025

    • SPACE2

      Public
      Tool for rapid clustering of antibody models by the structure of their CDRs.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•26•0•0•Updated Jul 14, 2025Jul 14, 2025
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