{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"samtools","owner":"samtools","isFork":false,"description":"Tools (written in C using htslib) for manipulating next-generation sequencing data","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":17,"issueCount":165,"starsCount":1608,"forksCount":577,"license":"Other","participation":[1,0,1,1,0,4,3,0,2,0,5,1,1,0,4,3,9,4,4,2,1,1,0,1,2,2,0,4,10,3,3,0,5,2,4,5,1,0,1,1,1,2,3,1,0,2,7,4,5,7,4,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-25T08:51:40.441Z"}},{"type":"Public","name":"htslib","owner":"samtools","isFork":false,"description":"C library for high-throughput sequencing data formats","allTopics":["bioinformatics","ngs","sam","vcf","bam","bcf","cram","htslib"],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":26,"issueCount":137,"starsCount":802,"forksCount":446,"license":"Other","participation":[4,1,1,0,0,1,3,18,7,8,5,0,1,2,0,3,4,1,6,6,4,3,2,3,2,3,1,3,2,5,6,1,6,5,0,5,0,0,6,5,3,2,7,2,1,1,4,5,1,5,3,2],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-24T15:28:45.987Z"}},{"type":"Public","name":"htsjdk","owner":"samtools","isFork":false,"description":"A Java API for high-throughput sequencing data (HTS) formats.","allTopics":["genomics","ngs","sequencing","sam","dna","fasta","bam","cram","java","vcf","java-api"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":47,"issueCount":262,"starsCount":281,"forksCount":242,"license":null,"participation":[0,3,2,0,0,0,0,0,0,0,2,3,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,1,0,0,1,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-17T21:21:32.927Z"}},{"type":"Public","name":"bcftools","owner":"samtools","isFork":false,"description":"This is the official development repository for BCFtools. See installation instructions and other documentation here <a href=\"http://samtools.github.io/bcftools/howtos/install.html\" rel=\"nofollow\">http://samtools.github.io/bcftools/howtos/install.html</a>","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":12,"issueCount":299,"starsCount":660,"forksCount":240,"license":"Other","participation":[1,0,0,5,1,3,2,5,3,5,4,10,0,3,6,1,3,4,1,9,0,3,0,3,2,12,4,0,8,1,8,1,3,1,8,6,1,0,7,4,1,1,1,3,6,15,3,3,7,7,5,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-16T10:43:28.157Z"}},{"type":"Public","name":"hts-specs","owner":"samtools","isFork":false,"description":"Specifications of SAM/BAM and related high-throughput sequencing file formats","allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":30,"issueCount":173,"starsCount":643,"forksCount":174,"license":null,"participation":[0,0,0,1,0,0,0,1,0,0,0,0,0,0,0,0,0,1,0,0,0,7,0,0,0,1,0,1,0,25,0,0,0,0,0,0,1,0,0,3,0,1,0,0,0,0,0,0,1,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-16T01:53:09.004Z"}},{"type":"Public","name":"www.htslib.org","owner":"samtools","isFork":false,"description":"The <a href=\"http://www.htslib.org/\" rel=\"nofollow\">http://www.htslib.org/</a> web site","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":3,"starsCount":8,"forksCount":12,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-12T15:57:06.154Z"}},{"type":"Public","name":"htscodecs","owner":"samtools","isFork":false,"description":"Custom compression for CRAM and others.","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":27,"forksCount":17,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-04T15:25:46.694Z"}},{"type":"Public","name":"c-maint","owner":"samtools","isFork":false,"description":"Maintenance scripts used with the htslib/samtools/bcftools repositories","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":1,"issueCount":0,"starsCount":3,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-15T15:45:44.202Z"}},{"type":"Public","name":"htslib-crypt4gh","owner":"samtools","isFork":false,"description":"HTSlib crypt4gh plug-in","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":2,"license":"Other","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-22T12:31:14.949Z"}},{"type":"Public","name":"klib","owner":"samtools","isFork":true,"description":"A standalone and lightweight C library","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":555,"license":"MIT License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-17T15:48:40.465Z"}},{"type":"Public","name":"samtools.github.com","owner":"samtools","isFork":false,"description":"The <a href=\"http://samtools.github.io/\" rel=\"nofollow\">http://samtools.github.io/</a> (master) and legacy <a href=\"http://samtools.sourceforge.net/\" rel=\"nofollow\">http://samtools.sourceforge.net/</a> (sf-pages) web sites","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-12-23T15:23:29.073Z"}},{"type":"Public archive","name":"tabix","owner":"samtools","isFork":false,"description":"Note: tabix and bgzip binaries are now part of the HTSlib project.","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":2,"issueCount":5,"starsCount":91,"forksCount":40,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-03T14:29:38.688Z"}},{"type":"Public","name":"htslib-plugins","owner":"samtools","isFork":false,"description":"Plugins for use with HTSlib","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":3,"starsCount":9,"forksCount":7,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-03-19T22:42:51.391Z"}},{"type":"Public","name":"htsjdk-next-beta","owner":"samtools","isFork":false,"description":"Staging ground for the development of the next major version of HTSJDK","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":10,"issueCount":21,"starsCount":6,"forksCount":3,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-03-04T15:41:07.745Z"}},{"type":"Public","name":"sapi","owner":"samtools","isFork":false,"description":"Sequence Alignment Programming Interface","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":7,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2012-03-09T03:01:41.000Z"}}],"repositoryCount":15,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"samtools repositories"}