{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"workflows","owner":"stjudecloud","isFork":false,"description":"Bioinformatics workflows developed for and used on the St. Jude Cloud project.","allTopics":["workflow","bioinformatics","genomics","workflow-engine","computational-biology","next-generation-sequencing","wdl","cwl","workflows","cromwell","wdl-workflow","cwl-workflow","bioinformatics-workflows","stjudecloud"],"primaryLanguage":{"name":"WDL","color":"#42f1f4"},"pullRequestCount":3,"issueCount":4,"starsCount":30,"forksCount":9,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-13T20:04:16.621Z"}},{"type":"Public","name":"wdldoc","owner":"stjudecloud","isFork":false,"description":"Create WDL documentation using Markdown.","allTopics":["workflow","bioinformatics","genomics","computational-biology","next-generation-sequencing","wdl","cromwell","wdl-workflow","stjudecloud"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":0,"starsCount":27,"forksCount":5,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-11T00:20:29.487Z"}},{"type":"Public","name":"ngsderive","owner":"stjudecloud","isFork":false,"description":"Forensic analysis tool useful in backwards computing information from next-generation sequencing data.","allTopics":["workflow","bioinformatics","genomics","workflow-engine","computational-biology","next-generation-sequencing","ngs","strandedness","strandedness-inference","gene-model"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":0,"starsCount":11,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-11T00:18:15.899Z"}},{"type":"Public","name":"cde-transformers","owner":"stjudecloud","isFork":false,"description":"TODO","allTopics":[],"primaryLanguage":{"name":"PHP","color":"#4F5D95"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T15:51:24.988Z"}},{"type":"Public","name":"university","owner":"stjudecloud","isFork":false,"description":"Educational materials for the St. Jude Cloud project.","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":12,"issueCount":0,"starsCount":4,"forksCount":19,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-17T17:06:02.880Z"}},{"type":"Public","name":"utilities","owner":"stjudecloud","isFork":false,"description":"Utility scripts created for and used on the St. Jude Cloud team.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-29T15:33:30.525Z"}},{"type":"Public","name":"expression-classification","owner":"stjudecloud","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-16T18:03:47.672Z"}},{"type":"Public","name":"rfcs","owner":"stjudecloud","isFork":false,"description":"Request for Comments (RFCs) on the St. Jude Cloud Project.","allTopics":["workflow","bioinformatics","genomics","workflow-engine","computational-biology","bioinformatics-pipeline","wdl","cwl","wdl-workflow","cwl-workflow","stjudecloud","discussion","proposal","rfcs"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":6,"issueCount":0,"starsCount":0,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-04T17:52:12.990Z"}},{"type":"Public","name":"msgenctl","owner":"stjudecloud","isFork":false,"description":"CLI to manage Microsoft Genomics workflows","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-16T15:43:02.354Z"}},{"type":"Public","name":"dx-rnaseq_standard","owner":"stjudecloud","isFork":false,"description":"Monolithic DNAnexus implementation of RNA-Seq V2 pipeline with miniwdl","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-09T14:31:22.836Z"}},{"type":"Public","name":"merge-counts","owner":"stjudecloud","isFork":false,"description":"Utility for merging RNA-seq expression counts files from St. Jude Cloud. ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":0,"starsCount":1,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-10T19:57:11.168Z"}},{"type":"Public","name":"mkdocs-stjudecloud","owner":"stjudecloud","isFork":true,"description":"A Material Design theme for MkDocs","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":4,"issueCount":0,"starsCount":0,"forksCount":3368,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-20T03:26:34.350Z"}},{"type":"Public","name":"theme","owner":"stjudecloud","isFork":false,"description":"Component library and CSS themes for applications on the St. Jude Cloud project.","allTopics":["react","sass","theme","bootstrap","fonts","vue","tailwindcss","stjudecloud","css"],"primaryLanguage":{"name":"Handlebars","color":"#f7931e"},"pullRequestCount":30,"issueCount":0,"starsCount":1,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-19T08:58:42.219Z"}},{"type":"Public","name":"mtsg","owner":"stjudecloud","isFork":false,"description":"Find and quantify COSMIC mutational signatures across samples","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-06T20:15:47.238Z"}},{"type":"Public template","name":"bioinformatics-tool-template","owner":"stjudecloud","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-27T15:01:32.022Z"}},{"type":"Public archive","name":"oliver","owner":"stjudecloud","isFork":false,"description":"An opinionated Cromwell orchestration manager.","allTopics":["workflow","bioinformatics","genomics","hpc","next-generation-sequencing","bioinformatics-pipeline","wdl","cromwell","wdl-workflow","workflow-execution","oliver"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":0,"starsCount":40,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-27T11:09:33.110Z"}},{"type":"Public","name":"dx-rapid_rnaseq","owner":"stjudecloud","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-06T14:01:24.228Z"}},{"type":"Public","name":"dx-tag_outputs","owner":"stjudecloud","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-30T20:56:53.018Z"}},{"type":"Public","name":"dx-build_visualizer","owner":"stjudecloud","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-30T20:56:32.792Z"}},{"type":"Public","name":"dx-fuzzion","owner":"stjudecloud","isFork":false,"description":"DNAnexus implementation of Fuzzion (https://github.com/stjude/fuzzion)","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-30T20:51:29.132Z"}},{"type":"Public","name":"dx-coverage_bw","owner":"stjudecloud","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-30T20:45:33.003Z"}},{"type":"Public","name":"dx-STAR","owner":"stjudecloud","isFork":false,"description":"DNAnexus app wrapper for STAR alignment","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-30T20:44:31.597Z"}},{"type":"Public","name":"release-python-action","owner":"stjudecloud","isFork":false,"description":"Github Action to release a Poetry-based Python app as we regularly do on the St. Jude Cloud project.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-30T01:52:30.278Z"}},{"type":"Public archive","name":"dx-rnapeg","owner":"stjudecloud","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-17T22:12:49.394Z"}},{"type":"Public archive","name":"docs","owner":"stjudecloud","isFork":false,"description":"Documentation on St. Jude Cloud.","allTopics":["documentation","bioinformatics","computational-biology","next-generation-sequencing","bioinformatics-pipeline","stjudecloud"],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":4,"issueCount":1,"starsCount":7,"forksCount":6,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-04-28T22:19:56.373Z"}},{"type":"Public","name":"cgc-go","owner":"stjudecloud","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-07-12T21:43:20.555Z"}},{"type":"Public","name":"dx-manta","owner":"stjudecloud","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-01-29T14:52:47.517Z"}},{"type":"Public","name":"stjude_htseq_count","owner":"stjudecloud","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-12-08T18:05:24.494Z"}},{"type":"Public","name":"cloud-app-tutorial","owner":"stjudecloud","isFork":false,"description":"Cloud application examples for St. Jude Cloud.","allTopics":["workflow","documentation","genomics","workflow-engine","stjudecloud","cloud","tutorial"],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-05-04T14:08:01.528Z"}}],"repositoryCount":29,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}