From 084940ef2bc542a3cab26c9cd58fa7877b23d2c1 Mon Sep 17 00:00:00 2001 From: oschwengers Date: Fri, 2 Aug 2019 16:53:42 +0200 Subject: [PATCH] update db v1.1.0 links --- README.md | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index db1721d..e1fdfff 100644 --- a/README.md +++ b/README.md @@ -75,7 +75,7 @@ All files are prefixed (``) as the input genome fasta file. Platon can be installed/used in 2 different ways. In all cases, the custom database must be downloaded which we provide for download: -[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3349652.svg)](https://doi.org/10.5281/zenodo.3349652) +[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3349651.svg)](https://doi.org/10.5281/zenodo.3349651) ### GitHub @@ -85,7 +85,7 @@ In all cases, the custom database must be downloaded which we provide for downlo Example: ``` $ git clone git@github.com:oschwengers/platon.git -$ wget https://zenodo.org/record/3349652/files/db.tar.gz +$ wget https://zenodo.org/record/3358926/files/db.tar.gz $ tar -xzf db.tar.gz $ rm db.tar.gz $ platon/bin/platon --db ./db genome.fasta @@ -96,7 +96,7 @@ Platon will automatically recognise it and thus, the database path doesn't need to be specified: ``` $ git clone git@github.com:oschwengers/platon.git -$ wget https://zenodo.org/record/3349652/files/db.tar.gz +$ wget https://zenodo.org/record/3358926/files/db.tar.gz $ tar -xzf db.tar.gz $ rm db.tar.gz $ mv db/ platon @@ -110,7 +110,7 @@ $ platon/bin/platon genome.fasta Example: ``` $ conda install -c conda-forge -c bioconda -c defaults platon -$ wget https://zenodo.org/record/3349652/files/db.tar.gz +$ wget https://zenodo.org/record/3358926/files/db.tar.gz $ tar -xzf db.tar.gz $ rm db.tar.gz $ platon --db ./db genome.fasta @@ -124,7 +124,7 @@ $ platon --db ./db genome.fasta Platon/database (1./2.): ``` $ pip3 install cb-platon -$ wget https://zenodo.org/record/3349652/files/db.tar.gz +$ wget https://zenodo.org/record/3358926/files/db.tar.gz $ tar -xzf db.tar.gz $ rm db.tar.gz $ platon --db ./db genome.fasta @@ -181,8 +181,8 @@ Platon depends on a custom database based on MPS, RDS, RefSeq Plasmid database, PlasmidFinder db as well as custom HMM models. This database based on RefSeq release 95 can be downloaded here: (zipped 1.8 Gb, unzipped 2.6 Gb) -- [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3349652.svg)](https://doi.org/10.5281/zenodo.3349652) -- [https://zenodo.org/record/3349652/files/db.tar.gz](https://zenodo.org/record/3349652/files/db.tar.gz) +[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3349651.svg)](https://doi.org/10.5281/zenodo.3349651) +- [https://zenodo.org/record/3358926/files/db.tar.gz](https://zenodo.org/record/3358926/files/db.tar.gz) ## Dependencies Platon was developed and tested in Python 3.5 and depends on BioPython (>=1.71).