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OSMOSE: Modelling Marine Exploited Ecosystems
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barriern Merge branch 'hotfix/1.0.2'
Test if yieldByfishery is defined before using it
Latest commit 86301a8 Jan 8, 2020
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R Test if yieldByFishery is null before using it to recalculate yield Jan 8, 2020
inst Update in parameter names Jan 7, 2020
java Adding new Java jar files to the branch (fisheries + background species) Mar 22, 2019
man updating help files. Dec 18, 2019
.RData Merging branch. Dec 10, 2018
.gitignore Update gitignore (plt test files not considered) Sep 11, 2019
DESCRIPTION Update version number Jan 8, 2020
NAMESPACE updating help files. Dec 18, 2019 and added Oct 19, 2017 Yunne changes to description. Oct 20, 2017 Putting a corrected version of the java. Oct 17, 2018

OSMOSE: Modelling Marine Exploited Ecosystems

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OSMOSE is a multispecies and Individual-based model (IBM) which focuses on fish species. This model assumes opportunistic predation based on spatial co-occurrence and size adequacy between a predator and its prey (size-based opportunistic predation). It represents fish individuals grouped into schools, which are characterized by their size, weight, age, taxonomy and geographical location (2D model), and which undergo major processes of fish life cycle (growth, explicit predation, natural and starvation mortalities, reproduction and migration) and fishing exploitation. The model needs basic biological parameters that are often available for a wide range of species, and which can be found in FishBase for instance, and fish spatial distribution data. This package provides tools to build a model and run simulations using the OSMOSE model. See for more details.

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