cwl.go
cwl.go
is just a parser of CWL file and input files based on CWL, for example 1st-tool.yaml and echo-job.yml.
Fully documented here!
Example
package main
import (
"fmt"
"os"
cwl "github.com/otiai10/cwl.go"
)
func main() {
file, _ := os.Open("hello.cwl")
doc := cwl.NewCWL()
doc.Decode(file)
fmt.Printf("%+v\n", doc)
}
Tests
Prerequisite
xtest.sh
requires Go package github.com/otiai10/mint
To install it.
go get -u github.com/otiai10/mint
Why xtest.sh and How to do test with it.
Because there are both array and dictionary in CWL specification, and as you know Golang can't keep order of map keys, the test fails sometimes by order problem. Therefore, ./xtest.sh
tries testing each case several times eagerly unless it passes.
For all cases,
./xtest.sh
For only 1 case which matches _wf3
,
./xtest.sh _wf3
Or if you want to execute single test for just 1 time (NOT eagerly),
go test ./tests -run _wf3