Macro/plugin for drift correction of confocal image stacks & Ca2+ spike analysis plugin
Python
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Drift-Correction Fixed multi drift correction Jul 21, 2015
dFdT_Profiler
.gitignore
README.md

README.md

ImageJ-Drift-Correction

Macro/plugin for drift correction of confocal image stacks & Ca2+ spike analysis plugin

Steps (for FIJI):

  1. Load confocal image stack

  2. Open ROI manager (Analyze -> Tools -> ROI Manager)

  3. Use Point tool, click on image stack at particular area and Z slice, go to ROI manager, add ROI

  4. Repeat 3, at different point but same part of image to track movement and correct drif

  5. Run plugin