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@overture-stack

Overture

A collection of open-source, extendable solutions for big-data genomic science.

Build, Deploy, Discover

overture-logo

Overture is a collection of open-source software used to overcome significant obstacles in storing, managing, and sharing genome-scale datasets. Overture is developed and maintained by the Software Engineering team at the Ontario Institute for Cancer Research (OICR). Our vision is to help research, healthcare, and patient communities collaborate and advance genomic research by providing cutting-edge open source software solutions.

portal-overview
  • Genome informatics first: You can use our solutions for anything, but here at Overture we focus on Genome Informatics. With rapidly expanding datasets at the heart, we build data platforms to gather, organize, and share genomic data in distributed cloud environments.

  • Swappable: There is no such thing as perfection. Our tools are implemented to be interchangeable from the get-go. You can pick-and-choose from our software stack and simply use the components that best match your use case.

  • An open world: We are strong believers in open-source software, open science, and open communication. Don’t hesitate to follow our teams activities on GitHub, or contact us from our Slack channel.

  • Closing the loop: Our team has established a strong foundation in building software solutions for genomic projects, from data generation and submission all the way to dissemination and analysis, leading to a deep understanding of the genomic data lifecycle. The Overture stack contains a wide array of components for cloud infrastructure, data shepherding, and analysis.

As an open-source project, we are continuously refining our software and are open to contributions and feedback from the community. We invite you to check out our development goals, and if you wish to contact us remotely, our Slack channel, like our software, will always be open and available.

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  1. arranger arranger Public

    Data portal API and component generation

    JavaScript 28 24

  2. stage stage Public

    TypeScript 4

  3. SONG SONG Public

    Metadata management and automated validation system

    Java 10 4

  4. score score Public

    Secure Cloud Object REsource: file transfer microservice

    Java 18 10

  5. maestro maestro Public

    Indexing software to connect SONG and Arranger through Elasticsearch

    Java

  6. ego ego Public

    OAuth 2.0 authorization service that supports multiple OpenID identity providers

    Java 25 14

Repositories

Showing 10 of 40 repositories
  • arranger Public

    Data portal API and component generation

    overture-stack/arranger’s past year of commit activity
    JavaScript 28 AGPL-3.0 24 59 17 Updated Jul 15, 2024
  • score Public

    Secure Cloud Object REsource: file transfer microservice

    overture-stack/score’s past year of commit activity
    Java 18 AGPL-3.0 10 58 (1 issue needs help) 14 Updated Jul 15, 2024
  • lectern Public

    Data Schema / Dictionary management system

    overture-stack/lectern’s past year of commit activity
    TypeScript 0 AGPL-3.0 1 19 (2 issues need help) 5 Updated Jul 15, 2024
  • composer Public
    overture-stack/composer’s past year of commit activity
    0 0 1 0 Updated Jul 12, 2024
  • stage Public
    overture-stack/stage’s past year of commit activity
    TypeScript 0 AGPL-3.0 4 20 3 Updated Jul 12, 2024
  • lyric Public
    overture-stack/lyric’s past year of commit activity
    TypeScript 0 AGPL-3.0 0 23 3 Updated Jul 11, 2024
  • website Public

    Overture.bio website, based on Gatsby static site generator

    overture-stack/website’s past year of commit activity
    JavaScript 1 AGPL-3.0 2 21 (1 issue needs help) 1 Updated Jul 10, 2024
  • overture-stack/iobio-components’s past year of commit activity
    TypeScript 0 1 11 0 Updated Jul 5, 2024
  • SONG Public

    Metadata management and automated validation system

    overture-stack/SONG’s past year of commit activity
    Java 10 AGPL-3.0 4 86 (3 issues need help) 4 Updated Jul 4, 2024
  • id-generator Public

    Global id generation service

    overture-stack/id-generator’s past year of commit activity
    TypeScript 0 0 4 2 Updated Jul 1, 2024