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fold-change value in sleuth_result.txt #59
@shrukane sorry for the delayed response. there is not, and part of the reason is because the
Some people have done the following:
I believe in the next version we will probably change from natural log to log base 2
Is there any update on this issue? I am trying to do a fair comparison of the Differential expression results that I have obtained using both Sleuth and EgdeR, but I cannot compare directly e.g. beta values vs. log fold changes, right? I was wondering if there is an easy way to do the conversion, or if there is an update in this issue in the last version of Sleuth to retrieve the log fold changes. Would you mind to better explain your previous answer with a practical example (sleuth_prep(........, transformation_function = function(x) log2(x + 0.5))) @pimentel?
Thank you so much in advance,