{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":755332339,"defaultBranch":"main","name":"impg","ownerLogin":"pangenome","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2024-02-09T22:50:23.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/60657583?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1716319141.0","currentOid":""},"activityList":{"items":[{"before":"98f2c0e9610838e917dd09c375432a56077971d3","after":"bcff3c8be9f63d8ddd116e928df649c5606b5565","ref":"refs/heads/window","pushedAt":"2024-05-21T21:21:52.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"subwaystation","name":"Simon Heumos","path":"/subwaystation","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10184961?s=80&v=4"},"commit":{"message":"unstable push","shortMessageHtmlLink":"unstable push"}},{"before":null,"after":"98f2c0e9610838e917dd09c375432a56077971d3","ref":"refs/heads/window","pushedAt":"2024-05-21T19:19:01.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"subwaystation","name":"Simon Heumos","path":"/subwaystation","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10184961?s=80&v=4"},"commit":{"message":"initiate all subgraphs extraction","shortMessageHtmlLink":"initiate all subgraphs extraction"}},{"before":"3a61f4d0427a424f4bebc74783935685f640cd11","after":"bb1ad8d14676e6307bd9f0ed218b06ca15183886","ref":"refs/heads/main","pushedAt":"2024-05-21T18:52:31.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #16 from bkille/compare-paf-index-timestamps\n\nCompare paf index timestamps","shortMessageHtmlLink":"Merge pull request #16 from bkille/compare-paf-index-timestamps"}},{"before":"7a8bfc18237d88850e85f22bd1d0b7437a8a393c","after":"3a61f4d0427a424f4bebc74783935685f640cd11","ref":"refs/heads/main","pushedAt":"2024-05-20T19:57:10.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #14 from pangenome/check_target_boundary\n\nEnsure that target end <= target length","shortMessageHtmlLink":"Merge pull request #14 from pangenome/check_target_boundary"}},{"before":null,"after":"c813386254792a4b53d61a8489ff4e1532373ebc","ref":"refs/heads/check_target_boundary","pushedAt":"2024-05-20T19:50:01.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"ensure that target end <= target len","shortMessageHtmlLink":"ensure that target end <= target len"}},{"before":"59d155acd440ea4a588c9072ab63a7867236222f","after":"7a8bfc18237d88850e85f22bd1d0b7437a8a393c","ref":"refs/heads/main","pushedAt":"2024-05-20T19:43:26.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #13 from pangenome/parse_subtarget_ranges\n\nManage ranges in extracted sequences (subsequences)","shortMessageHtmlLink":"Merge pull request #13 from pangenome/parse_subtarget_ranges"}},{"before":null,"after":"bf326b602e2034f5c08c058de8f08738113e50e6","ref":"refs/heads/parse_subtarget_ranges","pushedAt":"2024-05-20T19:33:52.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"split target range from the right side","shortMessageHtmlLink":"split target range from the right side"}},{"before":"83657bc04fbbb0a66b61f5b7a647496ed6c1ee61","after":"59d155acd440ea4a588c9072ab63a7867236222f","ref":"refs/heads/main","pushedAt":"2024-04-30T16:13:24.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"Merge pull request #8 from pangenome/add_bioconda\n\nadd bioconda badge","shortMessageHtmlLink":"Merge pull request #8 from pangenome/add_bioconda"}},{"before":null,"after":"fc6a8fc47a3c4f68922ccbe2e86d4e3f814f16c3","ref":"refs/heads/add_bioconda","pushedAt":"2024-04-30T16:11:17.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"AndreaGuarracino","name":"Andrea Guarracino","path":"/AndreaGuarracino","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62253982?s=80&v=4"},"commit":{"message":"add bioconda badge","shortMessageHtmlLink":"add bioconda badge"}},{"before":"6b15fa317aa1aeffa2bd4bc9da8ac826288d2775","after":"83657bc04fbbb0a66b61f5b7a647496ed6c1ee61","ref":"refs/heads/main","pushedAt":"2024-04-24T20:54:58.000Z","pushType":"push","commitsCount":11,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"Merge branch 'AndreaGuarracino-support_mappings'","shortMessageHtmlLink":"Merge branch 'AndreaGuarracino-support_mappings'"}},{"before":"ac5088a0fd12684dbceffb43722ccdacf7ac2d07","after":"6b15fa317aa1aeffa2bd4bc9da8ac826288d2775","ref":"refs/heads/main","pushedAt":"2024-04-24T20:47:35.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"Merge pull request #7 from bkille/remove-path-from-index\n\nRemove path from index","shortMessageHtmlLink":"Merge pull request #7 from bkille/remove-path-from-index"}},{"before":"cdb83e86f16ec237eb8957deefc8d3365412e6d8","after":"ac5088a0fd12684dbceffb43722ccdacf7ac2d07","ref":"refs/heads/main","pushedAt":"2024-04-15T23:20:18.000Z","pushType":"pr_merge","commitsCount":10,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"Merge pull request #4 from AndreaGuarracino/bed_input_bedpe_output\n\nmanage 'NAME' column in BED, BEDPE and PAF, 'M' CIGAR operation, GitHub workflow, strandness","shortMessageHtmlLink":"Merge pull request #4 from AndreaGuarracino/bed_input_bedpe_output"}},{"before":"c6a31ca53da3327f01bb9b2f6293ed2c06548d4e","after":"cdb83e86f16ec237eb8957deefc8d3365412e6d8","ref":"refs/heads/main","pushedAt":"2024-04-12T21:55:50.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"Merge pull request #3 from AndreaGuarracino/bed_input_bedpe_output\n\nAdd `bed` input, `bedpe` output, and `paf` output","shortMessageHtmlLink":"Merge pull request #3 from AndreaGuarracino/bed_input_bedpe_output"}},{"before":"308bc1f73f8f273721f6e2ee53f2337d4118f474","after":"c6a31ca53da3327f01bb9b2f6293ed2c06548d4e","ref":"refs/heads/main","pushedAt":"2024-04-01T17:19:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"add Bryce to authors","shortMessageHtmlLink":"add Bryce to authors"}},{"before":"2245e4e2355bc775b02936faa27270428cfcf05a","after":"308bc1f73f8f273721f6e2ee53f2337d4118f474","ref":"refs/heads/main","pushedAt":"2024-04-01T17:18:00.000Z","pushType":"pr_merge","commitsCount":11,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"Merge pull request #1 from bkille/lazy-parse\n\nStore cigar offsets in lightweight index","shortMessageHtmlLink":"Merge pull request #1 from bkille/lazy-parse"}},{"before":"8b6a718961a12419caca7f697f1eebbeb8ac435b","after":"2245e4e2355bc775b02936faa27270428cfcf05a","ref":"refs/heads/main","pushedAt":"2024-03-26T11:52:37.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"add initial query back to results","shortMessageHtmlLink":"add initial query back to results"}},{"before":"803f1bdb9b9588e88d6ff4f201c17bff13dc8149","after":"8b6a718961a12419caca7f697f1eebbeb8ac435b","ref":"refs/heads/main","pushedAt":"2024-03-22T22:19:44.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"set number of CPUs from CLI","shortMessageHtmlLink":"set number of CPUs from CLI"}},{"before":"9afe5f58532ec9af066e7c3449c0e98969a561c4","after":"803f1bdb9b9588e88d6ff4f201c17bff13dc8149","ref":"refs/heads/main","pushedAt":"2024-03-22T18:27:06.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"use xz for cigars","shortMessageHtmlLink":"use xz for cigars"}},{"before":"9e36e10b197a1af9fbf325e1c0c46296c5a2f799","after":"9afe5f58532ec9af066e7c3449c0e98969a561c4","ref":"refs/heads/main","pushedAt":"2024-03-22T17:47:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"query optional, print stats, cli","shortMessageHtmlLink":"query optional, print stats, cli"}},{"before":"0d5c3fe69cf6b9c4dd6b48577bf3050cb69e0290","after":"9e36e10b197a1af9fbf325e1c0c46296c5a2f799","ref":"refs/heads/main","pushedAt":"2024-03-22T15:01:12.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"no test warnings","shortMessageHtmlLink":"no test warnings"}},{"before":"717c68bda80c0bde0cd4b6e9ab3069a2396ccb5a","after":"0d5c3fe69cf6b9c4dd6b48577bf3050cb69e0290","ref":"refs/heads/main","pushedAt":"2024-03-22T14:22:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"serialize and deserialize the index","shortMessageHtmlLink":"serialize and deserialize the index"}},{"before":"234a261a620cf1333e8fd3be3cff13a1ff940455","after":"717c68bda80c0bde0cd4b6e9ab3069a2396ccb5a","ref":"refs/heads/main","pushedAt":"2024-03-21T21:18:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"compress and decompress cigars on the fly with lz4","shortMessageHtmlLink":"compress and decompress cigars on the fly with lz4"}},{"before":"c18821b93d9b69bce5bc090edaf86d8265e33717","after":"234a261a620cf1333e8fd3be3cff13a1ff940455","ref":"refs/heads/main","pushedAt":"2024-03-07T00:35:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"it works fine to use the basic coitree","shortMessageHtmlLink":"it works fine to use the basic coitree"}},{"before":"1f57a6c4116776035acefd7d140ad792d665026e","after":"c18821b93d9b69bce5bc090edaf86d8265e33717","ref":"refs/heads/main","pushedAt":"2024-03-07T00:33:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"use the basic coitree","shortMessageHtmlLink":"use the basic coitree"}},{"before":"fd01c0814cd16b7dc1f20bf74eb6c4703e8ea1a8","after":"1f57a6c4116776035acefd7d140ad792d665026e","ref":"refs/heads/main","pushedAt":"2024-03-07T00:18:16.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"flake locks","shortMessageHtmlLink":"flake locks"}},{"before":"4e7d77c38f306b62b016da74da595e7455fbe685","after":"fd01c0814cd16b7dc1f20bf74eb6c4703e8ea1a8","ref":"refs/heads/main","pushedAt":"2024-03-04T21:13:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"make a default for macosx coitrees neon stuff","shortMessageHtmlLink":"make a default for macosx coitrees neon stuff"}},{"before":"2760eec0a44cb12b6c8606b4fe6cf06731792c95","after":"4e7d77c38f306b62b016da74da595e7455fbe685","ref":"refs/heads/main","pushedAt":"2024-02-28T05:24:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"readme tweaks","shortMessageHtmlLink":"readme tweaks"}},{"before":"579c3a2a8ab31dfe681f2bd94a5b98309f908ce3","after":"2760eec0a44cb12b6c8606b4fe6cf06731792c95","ref":"refs/heads/main","pushedAt":"2024-02-28T05:23:17.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"include queried target range in output","shortMessageHtmlLink":"include queried target range in output"}},{"before":"f490dde20d2ac3b102514bb76cbadcdf8c8bd89d","after":"579c3a2a8ab31dfe681f2bd94a5b98309f908ce3","ref":"refs/heads/main","pushedAt":"2024-02-28T04:33:11.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"make transitive query work","shortMessageHtmlLink":"make transitive query work"}},{"before":"454de55823e3beb6f89078bed2b35b5ba8de3e0d","after":"f490dde20d2ac3b102514bb76cbadcdf8c8bd89d","ref":"refs/heads/main","pushedAt":"2024-02-28T04:04:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ekg","name":"Erik Garrison","path":"/ekg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/145425?s=80&v=4"},"commit":{"message":"that's what it took to get the tests passing","shortMessageHtmlLink":"that's what it took to get the tests passing"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEUExqfQA","startCursor":null,"endCursor":null}},"title":"Activity ยท pangenome/impg"}