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Code added on component_segmentation should match header variable names:
if"odgi_version"inpath:
# this is the headerassertpath["odgi_version"] ==ODGI_VERSION, f"Expecting version {ODGI_VERSION}." \
f"This version added the header with pangenome nucleotide count."print(f"Found file with {path['pangenome_length']} nucleotides in the pangenome and"f" a bin size of {path['bin_width']}bp Bin width.")
I'm starting with ODGI_VERSION 10. But these numbers will likely diverge since not every update in one requires and update in the other.
josiahseaman
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Mar 13, 2020
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