YASS: Yet Another Spike Sorter
Note: YASS is in an early stage of development. Although it is stable, it has only been tested with the data in our lab, but we are working to make it more flexible. Feel free to send feedback through Gitter. Expect a lot of API changes in the near future.
Lee, J. et al. (2017). YASS: Yet another spike sorter. Neural Information Processing Systems. Available in biorxiv: https://www.biorxiv.org/content/early/2017/06/19/151928
Installing the last stable version:
pip install yass-algorithm
If you are feeling adventurous, you can install from the master branch:
pip install git+git://github.com/paninski-lab/yass@master
We are currently updating our documentation, this section will be updated once we have an example with publicly available data.
Documentation hosted at https://yass.readthedocs.io
Note: this is indented only for YASS developers, our testing data is not publicly available.
Before running the tests, download the testing data:
export YASS_TESTING_DATA_URL=[URL-TO-TESTING-DATA] make download-test-data make test
To run tests and flake8 checks (from the root folder):
pip install -r requirements.txt make test
You need to install graphviz to build the graphs included in the documentation. On macOS:
brew install graphviz
To build the docs (from the root folder):
pip install -r requirements.txt make docs