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Copy pathsubshard.rs
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Copy pathsubshard.rs
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546 lines (497 loc) · 16 KB
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//! Manage subshards of 12 bytes of 4ko segments.
//! Subshards are processed in to shards of 64 bytes
//! to benefit from the simd optimisation in the
//! best case.
use super::*;
use std::{
collections::{BTreeMap, BTreeSet},
mem::MaybeUninit,
};
/// Fix segment size.
pub const SEGMENT_SIZE: usize = 4096;
const SUBSHARD_PER_SEGMENT: usize = ((SEGMENT_SIZE - 1) / SUBSHARD_SIZE) + 1;
/// Segment size with added padding to allow being
/// erasure coded in batch while staying on same points indexes.
const SEGMENT_SIZE_ALIGNED: usize = SUBSHARD_PER_SEGMENT * SUBSHARD_SIZE; // 4104 byte
/// Fix number of shards and subshards.
pub const N_SHARDS: usize = 342;
/// The number of time the erasure coded shards we want.
pub const N_REDUNDANCY: usize = 2;
/// The total number of shards, both original and ec one.
pub const TOTAL_SHARDS: usize = (1 + N_REDUNDANCY) * N_SHARDS;
/// The reed-solomon library requires each shards to be 64 bytes aligned.
const SHARD_MIN_SIZE: usize = SHARD_ALIGNMENT;
/// In shards lower and higher byte of each point are spaced for simd.
const POINT_BYTE_SPACING: usize = SHARD_ALIGNMENT / 2;
/// Number points in each subshards.
const SUBSHARD_POINTS: usize = 6;
/// Size of a point in bytes.
const POINT_SIZE: usize = 2; // gf16
/// Size of a subshard in bytes.
pub const SUBSHARD_SIZE: usize = POINT_SIZE * SUBSHARD_POINTS; // 12bytes
/// Aligned number of full shard to process subshard.
const SUBSHARD_BATCH_MUL: usize = 3; // 3 * 12 is aligned with 64
/// Number of segments in a aligned batch.
const SEGMENTS_PER_SUBSHARD_BATCH_OPTIMAL: usize =
SUBSHARD_BATCH_MUL * SHARD_MIN_SIZE / SUBSHARD_SIZE; // 16
const BATCH_SHARD_SIZE: usize = SUBSHARD_BATCH_MUL * SHARD_MIN_SIZE; // 192
const SUBSHARD_BATCH_MUL1: usize = SHARD_MIN_SIZE / SUBSHARD_SIZE; // 64 / 12, only 5
const BATCH_SHARD_SIZE_1: usize = SHARD_MIN_SIZE; // 192
const SUBSHARD_BATCH_MUL2: usize = (SHARD_MIN_SIZE * 2) / SUBSHARD_SIZE; // 128 / 12, only 10
const BATCH_SHARD_SIZE_2: usize = 2 * SHARD_MIN_SIZE; // 192
/// Fix size segment of a larger data.
/// Data is padded when unaligned with
/// the segment size.
#[derive(PartialEq, Eq, Clone, Encode, Decode, Debug)]
pub struct Segment {
/// Fix size chunk of data.
pub data: Box<[u8; SEGMENT_SIZE]>,
/// The index of this segment against its full data.
pub index: u32,
}
/// Subshard (points in sequential orders).
pub type SubShard = [u8; SUBSHARD_SIZE];
/// Subshard uses some temp memory, so these should be used multiple time instead of allocating.
pub struct SubShardEncoder {
encoder: reed_solomon::ReedSolomonEncoder,
last_shard_size: usize,
}
impl SubShardEncoder {
pub fn new() -> Result<Self, Error> {
Ok(Self {
last_shard_size: BATCH_SHARD_SIZE,
encoder: reed_solomon::ReedSolomonEncoder::new(
N_SHARDS,
N_REDUNDANCY * N_SHARDS,
BATCH_SHARD_SIZE,
)?,
})
}
/// Construct erasure-coded chunks.
/// Resulting in groups of subshard per input segments.
pub fn construct_chunks(
&mut self,
segments: &[Segment],
) -> Result<Vec<Box<[SubShard; TOTAL_SHARDS]>>, Error> {
let mut result = vec![Box::new([[0u8; SUBSHARD_SIZE]; TOTAL_SHARDS]); segments.len()];
let mut seg_offset = 0;
let mut shard = [0u8; BATCH_SHARD_SIZE];
for segments in segments.chunks(SEGMENTS_PER_SUBSHARD_BATCH_OPTIMAL) {
let s = if segments.len() <= SUBSHARD_BATCH_MUL1 {
// 1 *
BATCH_SHARD_SIZE_1
} else if segments.len() <= SUBSHARD_BATCH_MUL2 {
// 2 *
BATCH_SHARD_SIZE_2
} else {
// 3 *
BATCH_SHARD_SIZE
};
if self.last_shard_size != s {
self.encoder.reset(N_SHARDS, N_REDUNDANCY * N_SHARDS, s)?;
self.last_shard_size = s;
}
for shard_a in 0..N_SHARDS {
let mut shard_i = 0;
for segment_i in 0..segments.len() {
for point_i in 0..SUBSHARD_POINTS {
let data_i = (point_i * N_SHARDS) * 2 + shard_a * 2;
let point = if data_i < SEGMENT_SIZE {
(segments[segment_i].data[data_i], segments[segment_i].data[data_i + 1])
} else {
(0, 0)
};
shard[shard_i] = point.0;
shard[shard_i + POINT_BYTE_SPACING] = point.1;
result[seg_offset + segment_i][shard_a][point_i * 2] = point.0;
result[seg_offset + segment_i][shard_a][point_i * 2 + 1] = point.1;
shard_i += 1;
if shard_i % POINT_BYTE_SPACING == 0 {
shard_i += POINT_BYTE_SPACING;
}
}
}
self.encoder.add_original_shard(&shard[..s])?;
}
let enco_res = self.encoder.encode()?;
for (shard_a, data) in enco_res.recovery_iter().enumerate() {
let mut segment_i = 0;
let mut data_i = 0;
while data_i != data.len() {
for point_i in 0..SUBSHARD_POINTS {
let point = (data[data_i], data[data_i + 32]);
data_i += 1;
if data_i % POINT_BYTE_SPACING == 0 {
data_i += POINT_BYTE_SPACING;
}
result[seg_offset + segment_i][shard_a + N_SHARDS][point_i * 2] = point.0;
result[seg_offset + segment_i][shard_a + N_SHARDS][point_i * 2 + 1] =
point.1;
}
segment_i += 1;
if segment_i == segments.len() {
break;
}
}
}
seg_offset += SEGMENTS_PER_SUBSHARD_BATCH_OPTIMAL;
}
Ok(result)
}
}
/// Subshard uses some temp memory, so these should be used multiple time instead of allocating.
pub struct SubShardDecoder {
decoder: reed_solomon::ReedSolomonDecoder,
// cannot access ori shards from decoder, copying them here.
shards_ori: [[u8; BATCH_SHARD_SIZE]; N_SHARDS],
last_shard_size: usize,
}
impl SubShardDecoder {
pub fn new() -> Result<Self, Error> {
let mut shards: [MaybeUninit<[u8; BATCH_SHARD_SIZE]>; N_SHARDS] =
unsafe { MaybeUninit::uninit().assume_init() };
for shard in shards.iter_mut() {
shard.write([0u8; BATCH_SHARD_SIZE]);
}
Ok(Self {
last_shard_size: BATCH_SHARD_SIZE,
decoder: reed_solomon::ReedSolomonDecoder::new(
N_SHARDS,
N_REDUNDANCY * N_SHARDS,
BATCH_SHARD_SIZE,
)?,
shards_ori: unsafe { std::mem::transmute(shards) },
})
}
// u8 is the segment number.
pub fn reconstruct<'a, I>(
&mut self,
subshards: &'a mut I,
) -> Result<(Vec<(u8, Segment)>, usize), Error>
where
I: Iterator<Item = (u8, ChunkIndex, &'a SubShard)>,
{
let mut ori = vec![Vec::new(); TOTAL_SHARDS];
let mut segments = BTreeMap::<u8, usize>::new();
let mut nb_decode = 0;
// TODO processed and run_segments could be skiped if we are sure to get
// correct number of chunks all for the same given chunk ix and segments.
for (segment, chunk_index, chunk) in subshards {
ori[chunk_index.0 as usize].push((segment, chunk));
*segments.entry(segment).or_default() += 1;
}
// make batches of segments
let mut segment_batches = Vec::new();
let mut processed_segments = BTreeSet::new();
let mut nb_segments = 0;
for (segment, c) in segments.iter() {
if *c >= N_SHARDS {
nb_segments += 1;
} else {
processed_segments.insert(*segment);
}
}
while nb_segments > 0 {
// count all segments written, and stop at first segment having enough.
let mut run_segments = BTreeMap::new();
let mut ok = false;
for chunks in ori.iter() {
let first = run_segments.is_empty();
for (segment_i, _chunk) in chunks {
if !processed_segments.contains(segment_i) {
if first {
if !processed_segments.contains(segment_i) {
run_segments.insert(*segment_i, 1);
}
} else if let Some(c) = run_segments.get_mut(segment_i) {
*c += 1;
if *c == N_SHARDS {
ok = true;
}
}
}
}
if ok {
break;
}
}
if !ok {
if run_segments.is_empty() {
// should not happen
break;
}
for (seg, _count) in run_segments.into_iter() {
processed_segments.insert(seg);
}
continue;
}
// TODO max size 16, rather [;16] lookup?
let mut segment_batch = BTreeSet::new();
for (seg, count) in run_segments.into_iter() {
if count == N_SHARDS {
processed_segments.insert(seg);
segment_batch.insert(seg);
if segment_batch.len() == 16 {
segment_batches.push(segment_batch);
segment_batch = Default::default();
}
}
}
if !segment_batch.is_empty() {
nb_segments -= segment_batch.len();
segment_batches.push(segment_batch);
}
}
for chunks in ori.iter_mut() {
chunks.sort_by_key(|c| c.0);
}
let mut result2 = Vec::new();
// Note that sometime byte could stay set to non zero value, but it does not matter.
let mut shard_buff = [0u8; BATCH_SHARD_SIZE];
for segments in segment_batches {
let s = if segments.len() <= SUBSHARD_BATCH_MUL1 {
// 1 *
BATCH_SHARD_SIZE_1
} else if segments.len() <= SUBSHARD_BATCH_MUL2 {
// 2 *
BATCH_SHARD_SIZE_2
} else {
// 3 *
BATCH_SHARD_SIZE
};
if s != self.last_shard_size {
self.decoder.reset(N_SHARDS, N_REDUNDANCY * N_SHARDS, s)?;
self.last_shard_size = s;
}
let mut nb_chunk = 0;
let mut ori_map: std::collections::BTreeMap<usize, &[u8]> = Default::default();
for (chunk_ix, chunks) in ori.iter().enumerate() {
if chunks.is_empty() {
continue;
}
let mut nb = 0;
let shard = if chunk_ix < N_SHARDS {
let s = &self.shards_ori[chunk_ix] as *const _ as *mut [u8; BATCH_SHARD_SIZE];
// each shard are only accessed a single time here.
unsafe { s.as_mut().expect("non null") }
} else {
&mut shard_buff
};
for (segment_i, chunk) in chunks {
if segments.contains(segment_i) {
let shard_i_s = nb * SUBSHARD_SIZE / SHARD_MIN_SIZE;
let shard_i_r = nb * SUBSHARD_SIZE % SHARD_MIN_SIZE;
let mut shard_i = shard_i_s * SHARD_MIN_SIZE + shard_i_r / POINT_SIZE;
for point_i in 0..SUBSHARD_POINTS {
shard[shard_i] = chunk[point_i * POINT_SIZE];
shard[shard_i + POINT_BYTE_SPACING] = chunk[(point_i * POINT_SIZE) + 1];
shard_i += 1;
if shard_i % POINT_BYTE_SPACING == 0 {
shard_i += POINT_BYTE_SPACING;
}
}
nb += 1;
}
}
debug_assert!(nb == 0 || nb == segments.len());
if nb > 0 {
if chunk_ix < N_SHARDS {
self.decoder
.add_original_shard(chunk_ix, &self.shards_ori[chunk_ix][..s])?;
ori_map.insert(chunk_ix, &self.shards_ori[chunk_ix][..]);
} else {
self.decoder.add_recovery_shard(chunk_ix - N_SHARDS, &shard_buff[..s])?;
}
nb_chunk += 1;
if nb_chunk == N_SHARDS {
break;
}
}
}
debug_assert!(nb_chunk == N_SHARDS);
let ori_ret = self.decoder.decode()?;
nb_decode += 1;
// TODO modify deps to also access original data and avoid self.ori_shards buffer.
// Also to avoid instantiating ori_map container.
for (i, o) in ori_ret.restored_original_iter() {
ori_map.insert(i, o);
}
debug_assert_eq!(ori_map.len(), N_SHARDS);
for (i, segment) in segments.iter().enumerate() {
let chunk_start = i * SEGMENT_SIZE_ALIGNED;
let original = ori_chunk_to_data(&ori_map, chunk_start, Some(SEGMENT_SIZE))
.expect("number of segments checked");
result2
.push((*segment, Segment { data: Box::new(original), index: *segment as u32 }));
}
}
Ok((result2, nb_decode))
}
}
fn ori_chunk_to_data(
shards: &BTreeMap<usize, &[u8]>,
start_data: usize,
data_len: Option<usize>,
) -> Option<[u8; 4096]> {
let mut data = [0u8; 4096];
let mut i_data = 0;
let (mut full_i, mut shard_i, mut shard_a) = data_index_to_chunk_index(start_data);
let mut shard_i_offset = full_i * SHARD_MIN_SIZE;
loop {
let s = shards.get(&shard_a)?;
let l = s[shard_i_offset + shard_i];
data[i_data] = l;
i_data += 1;
let r = s[shard_i_offset + shard_i + POINT_BYTE_SPACING];
data[i_data] = r;
i_data += 1;
if data_len.map(|m| i_data >= m).unwrap_or(false) {
break;
}
shard_a += 1;
if shard_a % N_SHARDS == 0 {
shard_i += 1;
if shard_i == POINT_BYTE_SPACING {
shard_i = 0;
full_i += 1;
if full_i == SUBSHARD_BATCH_MUL {
break;
}
shard_i_offset = full_i * SHARD_MIN_SIZE;
}
shard_a = 0;
}
}
Some(data)
}
// return chunk index among N_SHARDS (group of n , ix in slice, ix in n)
fn data_index_to_chunk_index(index: usize) -> (usize, usize, usize) {
let shard_batch_size = SHARD_MIN_SIZE * N_SHARDS;
let a = index % shard_batch_size;
let b = a % (N_SHARDS * POINT_SIZE);
(index / shard_batch_size, a / (N_SHARDS * POINT_SIZE), b / POINT_SIZE)
}
#[cfg(test)]
mod tests {
use super::*;
#[test]
fn test_segments() {
for count in [1, 2, 4, 5, 10, 16] {
test_sc(count);
}
}
fn test_sc(nb_seg: usize) {
use rand::{rngs::SmallRng, Rng, SeedableRng};
let mut rng = SmallRng::from_seed([0; 32]);
let segments: Vec<_> = (0..nb_seg)
.map(|s| {
let mut se = [0u8; SEGMENT_SIZE];
rng.fill::<_>(&mut se[..]);
Segment { data: Box::new(se), index: s as u32 }
})
.collect();
let mut encoder = SubShardEncoder::new().unwrap();
let mut decoder = SubShardDecoder::new().unwrap();
let chunks = encoder.construct_chunks(&segments).unwrap();
for i_seg in 0..nb_seg {
let mut it = (chunks[i_seg][0..N_SHARDS / 3])
.iter()
.enumerate()
.map(|(i, c)| (i_seg as u8, ChunkIndex(i as u16), c))
.chain(
(chunks[i_seg][N_SHARDS..N_SHARDS + N_SHARDS / 3])
.iter()
.enumerate()
.map(|(i, c)| (i_seg as u8, ChunkIndex(i as u16 + N_SHARDS as u16), c)),
)
.chain(
(chunks[i_seg][N_SHARDS * 2..N_SHARDS * 2 + N_SHARDS / 3])
.iter()
.enumerate()
.map(|(i, c)| (i_seg as u8, ChunkIndex(i as u16 + N_SHARDS as u16 * 2), c)),
);
let (s, i) = decoder.reconstruct(&mut it).unwrap();
assert_eq!(i, 1);
assert_eq!((i_seg as u8, segments[i_seg].clone()), s[0]);
}
// try batching 2 subchunk
if nb_seg < 2 {
return;
}
let i_seg1 = 0;
let i_seg2 = nb_seg / 2;
let it1 = (chunks[i_seg1][0..N_SHARDS / 3])
.iter()
.enumerate()
.map(|(i, c)| (i_seg1 as u8, ChunkIndex(i as u16), c))
.chain(
(chunks[i_seg1][N_SHARDS..N_SHARDS + N_SHARDS / 3])
.iter()
.enumerate()
.map(|(i, c)| (i_seg1 as u8, ChunkIndex(i as u16 + N_SHARDS as u16), c)),
)
.chain(
(chunks[i_seg1][N_SHARDS * 2..N_SHARDS * 2 + N_SHARDS / 3])
.iter()
.enumerate()
.map(|(i, c)| (i_seg1 as u8, ChunkIndex(i as u16 + N_SHARDS as u16 * 2), c)),
);
let it2 = (chunks[i_seg2][0..N_SHARDS / 3])
.iter()
.enumerate()
.map(|(i, c)| (i_seg2 as u8, ChunkIndex(i as u16), c))
.chain(
(chunks[i_seg2][N_SHARDS..N_SHARDS + N_SHARDS / 3])
.iter()
.enumerate()
.map(|(i, c)| (i_seg2 as u8, ChunkIndex(i as u16 + N_SHARDS as u16), c)),
)
.chain(
(chunks[i_seg2][N_SHARDS * 2..N_SHARDS * 2 + N_SHARDS / 3])
.iter()
.enumerate()
.map(|(i, c)| (i_seg2 as u8, ChunkIndex(i as u16 + N_SHARDS as u16 * 2), c)),
);
let (s, i) = decoder.reconstruct(&mut it1.chain(it2)).unwrap();
assert_eq!(i, 1); // all chunk ix are aligned so can be processed at once.
assert_eq!((i_seg1 as u8, segments[i_seg1].clone()), s[0]);
assert_eq!((i_seg2 as u8, segments[i_seg2].clone()), s[1]);
let it1 = (chunks[i_seg1][0..N_SHARDS / 3])
.iter()
.enumerate()
.map(|(i, c)| (i_seg1 as u8, ChunkIndex(i as u16), c))
.chain(
(chunks[i_seg1][N_SHARDS..N_SHARDS + N_SHARDS / 3])
.iter()
.enumerate()
.map(|(i, c)| (i_seg1 as u8, ChunkIndex(i as u16 + N_SHARDS as u16), c)),
)
.chain(
(chunks[i_seg1][N_SHARDS * 2..N_SHARDS * 2 + N_SHARDS / 3])
.iter()
.enumerate()
.map(|(i, c)| (i_seg1 as u8, ChunkIndex(i as u16 + N_SHARDS as u16 * 2), c)),
);
// unaligned a batch of chunks
let it3 = (chunks[i_seg2][1..N_SHARDS / 3 + 1])
.iter()
.enumerate()
.map(|(i, c)| (i_seg2 as u8, ChunkIndex(i as u16 + 1), c))
.chain(
(chunks[i_seg2][N_SHARDS..N_SHARDS + N_SHARDS / 3])
.iter()
.enumerate()
.map(|(i, c)| (i_seg2 as u8, ChunkIndex(i as u16 + N_SHARDS as u16), c)),
)
.chain(
(chunks[i_seg2][N_SHARDS * 2..N_SHARDS * 2 + N_SHARDS / 3])
.iter()
.enumerate()
.map(|(i, c)| (i_seg2 as u8, ChunkIndex(i as u16 + N_SHARDS as u16 * 2), c)),
);
let (s, i) = decoder.reconstruct(&mut it1.chain(it3)).unwrap();
assert_eq!(i, 2); // not all chunk ix are aligned
assert_eq!((i_seg1 as u8, segments[i_seg1].clone()), s[0]);
assert_eq!((i_seg2 as u8, segments[i_seg2].clone()), s[1]);
}
}