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@parklab

Park Lab at Harvard Medical School

Pinned

  1. nozzle Public

    Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

    R 66 22

  2. Software program for checking sample matching for NGS data

    Python 86 39

  3. emsar Public

    EMSAR quantifies transcripts from RNA-seq data (Citation : Lee et al., BMC Bioinformatics 2015, 16:278, http://www.biomedcentral.com/1471-2105/16/278)

    C 8 1

Repositories

  • mutagenesis_tools Public

    Scripts for simulating mutant peptides and reading frames from mutations

    Python 0 0 0 0 Updated Nov 14, 2022
  • SigMA Public

    Mutational signature analysis for low statistics SNV data

    R 53 19 1 0 Updated Nov 14, 2022
  • scan-snv Public

    Single cell somatic genotyper

    Python 8 2 6 0 Updated Sep 28, 2022
  • MosaicForecast Public

    A mosaic detecting software based on phasing and random forest

    Python 53 MIT 18 2 4 Updated Sep 28, 2022
  • SCAN2 Public

    SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)

    Python 7 0 7 0 Updated Sep 25, 2022
  • r-scan2 Public

    R package supporting the SCAN2 pipeline

    R 0 0 0 0 Updated Sep 25, 2022
  • xTea Public

    Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

    Python 67 13 9 1 Updated Sep 22, 2022
  • MuSiCal Public

    A comprehensive toolkit for mutational signature analysis

    Python 8 3 1 0 Updated Sep 7, 2022
  • MSIprofiler Public

    Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data

    Python 17 4 0 2 Updated Jul 15, 2022
  • r-mutenrich Public

    Analyze distribution of somatic mutations with permutations as a background

    R 0 0 0 0 Updated Jul 9, 2022

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