diff --git a/pyproject.toml b/pyproject.toml
index cb84979cd..0886f2ce3 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,27 +1,3 @@
-[tool.poetry]
-name = "patchwork-cli"
-version = "0.0.48"
-description = ""
-authors = ["patched.codes"]
-license = "AGPL"
-readme = "README.md"
-packages = [
-    { include = "patchwork", from = "." }
-]
-classifiers = [
-    "Development Status :: 3 - Alpha",
-    "Environment :: Console",
-    "Intended Audience :: Developers",
-    "License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)",
-    "Operating System :: OS Independent",
-    "Programming Language :: Python :: 3",
-    "Programming Language :: Python :: 3.8",
-    "Topic :: Software Development :: Libraries :: Python Modules",
-    "Topic :: Software Development :: Quality Assurance",
-    "Topic :: Software Development :: Testing",
-    "Topic :: Utilities"
-]
-
 [tool.poetry.dependencies]
 python = "^3.8"
 typing-extensions = "^4.11.0"
@@ -38,14 +14,14 @@ patched-code2prompt = "0.2.0"
 pyyaml = "^6.0.1"
 packageurl-python = "~0.15.0"
 semver = "~3.0.2"
-requests = "~2.31.0"
+requests = "~2.32.0"
 chardet = "~5.2.0"
 attrs = "~23.2.0"
 google-ai-generativelanguage = "~0.6.7"
 anthropic = "~0.31.2"
 rich = "~13.7.1"
 chevron = "~0.14.0"
-scikit-learn = "^1.3.2"
+scikit-learn = "^1.5.0"
 # pinning transitive dependencies
 tree-sitter = "~0.21.3"
 numpy = [
@@ -57,7 +33,7 @@ pandas = [
     { version = "^2.0.3", python = "3.8, <=3.11", optional = true}
 ]
 scipy = [
-    { version = "^1.7.3", python = "^3.12", optional = true},
+    { version = "^1.10.0", python = "^3.12", optional = true},
     { version = "^1.6.1", python = "3.8, <=3.11", optional = true}
 ]
 
@@ -75,62 +51,4 @@ orjson = {version = "~3.9.15", optional = true }
 
 # notifications
 slack-sdk = {version = "~3.28.0", optional = true }
-
-[tool.poetry.extras]
-security = ["semgrep", "owasp-depscan"]
-rag = ["chromadb", "sentence-transformers", "torch", "orjson"]
-notifications = ["slack-sdk"]
-all = [
-    "semgrep", "owasp-depscan",
-    "chromadb", "sentence-transformers", "torch", "orjson",
-    "slack-sdk",
-]
-
-[tool.poetry.group.dev.dependencies]
-setuptools = "*"
-poethepoet = { version = "^0.27.0", extras = ["poetry-plugin"] }
-mypy = "^1.7.1"
-types-requests = "~2.31.0"
-black = "^23.12.0"
-isort = "^5.13.2"
-autoflake = "^2.3.1"
-pytest = "^8.1.1"
-pytest-mock = "^3.8.0"
-pytest-localserver = "^0.8.1"
-datasets = "^1.14.0"
-
-[build-system]
-requires = ["poetry-core"]
-build-backend = "poetry.core.masonry.api"
-
-[tool.poetry.scripts]
-patchwork = 'patchwork.app:cli'
-
-[tool.poe.poetry_hooks]
-#pre_build = "mypy"
-post_update = "lint"
-
-[tool.poe.env]
-PROJ_PATH.default = "patchwork"
-TEST_PATH.default = "tests"
-
-[tool.poe.tasks]
-#mypy = "mypy ${PROJ_PATH}"
-lint = [
-    {cmd = "autoflake --recursive ${PROJ_PATH} ${TEST_PATH}"},
-    {cmd = "isort ${PROJ_PATH} ${TEST_PATH}"},
-    {cmd = "black ${PROJ_PATH} ${TEST_PATH}"}
-]
-
-[tool.black]
-target-version = ['py310']
-line-length = 120
-
-[tool.isort]
-profile = "black"
-
-[tool.autoflake]
-in-place = true
-remove-all-unused-imports = true
-expand-star-imports = true
-ignore-init-module-imports = true
+```
\ No newline at end of file