Demos & Sample Workflows
This page lists a number of demo workflows that you can use to get acquainted with using Pathomx for analysis. Follow the links for both the completed workflow and a step-by-step guide to it's construction and then use.
If you have suggestions for new workflows or additions to the list open an feature request via Github.
.. toctree:: :maxdepth: 2 1d_bruker_nmr_analysis 1d_bruker_nmr_with_re_export 2d_jres_bml_nmr_analysis
- Monocyte differentiation to macrophage and subsequent polarization (HG-U133B). Demo analysis with a publicly available GEO dataset. Showing import and workflow construction for PCA, PLS-DA and GPML-based pathway visualisation with the visual editor. (Pathomx v2.0.0) Download Workflow - GEO dataset - GEO metadata - Glycolysis WikiPathway - Video
- Demonstrating analysis with the new visual editor showing analysis of multiple datasets, inline views and a number of 1D NMR processing tools.
- Short example analysis of 2D metabolomic data showing the advantages of reusing workflows for analysis. Complete preliminary analysis of the dataset in 1m 30s. (Pathomx v1.0.0)