Pathway Commons
Pinned repositories
Biological pathway data integration and access platform (Pathway Commons)
A project to digitally capture biological data from academic papers
Resource for pathway analysis and Pathway Commons
Pathway visualization and analysis tool for Pathway Commons and other BioPAX data
Pathway Commons Home Page (/about/)
A docker version of the clulab/reach webservices
pathway-cards
Forked from onursumer/oncosignSBML to BioPAX Level3 converter, specific to the Recon2 data.
Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.
View biological networks via Cytoscape.js and sbgn-ml
pathways-search Archived
A web app to search pathways in Pathway Commons
A library to facilitate access to the Pathway Commons 2 API
MSigDB (human C3 TFT motif gene sets only) to BioPAX Level3 data converter.
To convert from TRANSFAC GSEA/GMT format - transcription factors and their predicted targets - to BioPAX L3.
An npm module that converts xml based SBGN files to JSON for Cytoscape.js
Pathway Commons Bio Network Visualizer
networks Archived
A web app to search sub-networks in Pathway Commons
The Web API Docs App
chilay-sbgn
Forked from iVis-at-Bilkent/chilayChisio Layout (ChiLay) graph layout framework for SBGN
Comparative Toxicogenomics Database (CTD) to BioPAX Level3 data converter.
DrugBank to BioPAX Level3 data converter.
NodeJS Tool for scraping Pathway Commons for statistical analysis
nms Archived
Neighborhood Maps Server for cPath1 (PC)
Modeling and querying support for SIF graphs
Programming task for software developers
The pathway resource list
MiRTarBase to BioPAX Level3 data converter.
