Pathway Commons

Biological pathway data integration and access platform (Pathway Commons)

A project to digitally capture biological data from academic papers

Web UI for accessing Pathway Commons data

Resource for pathway analysis and Pathway Commons

Pathway Commons binary SIF graph web service

Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.

Pathway visualization and analysis tool for Pathway Commons and other BioPAX data

Pathway Commons Bio Network Visualizer

Pathway Commons Home Page (/about/)

An npm module that converts xml based SBGN files to JSON for Cytoscape.js

Comparative Toxicogenomics Database (CTD) to BioPAX Level3 data converter.

Modeling and querying support for SIF graphs

A docker version of the clulab/reach webservices

A library to facilitate access to the Pathway Commons 2 API

SBML to BioPAX Level3 converter, specific to the Recon2 data.

View biological networks via Cytoscape.js and sbgn-ml

MSigDB (human C3 TFT motif gene sets only) to BioPAX Level3 data converter.

To convert from TRANSFAC GSEA/GMT format - transcription factors and their predicted targets - to BioPAX L3.

DrugBank to BioPAX Level3 data converter.

NodeJS Tool for scraping Pathway Commons for statistical analysis