Pathway Commons

A network biology resource for biological pathway information and software.

about Public
Pathway Commons Home Page (/about/)

CSS 3 2 3 0 Updated Jun 28, 2022
factoid-converters Public
Web services for Factoid project to convert between JSON, BioPAX, SBGN data formats

Java 2 MIT 3 5 0 Updated Jun 27, 2022
CyPath2 Public
Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.

Java 2 LGPL-2.1 4 4 0 Updated Jun 25, 2022
app-ui Public
Web UI for accessing Pathway Commons data

JavaScript 1 MIT 13 13 0 Updated Jun 24, 2022
factoid Public
A project to capture biological pathway data from academic papers

JavaScript 22 MIT 7 14 2 Updated Jun 21, 2022
ncbiutils Public
A wrapper for retrieving records from PubMed

Python 1 MIT 0 0 0 Updated Jun 15, 2022
pathway-abstract-classifier Public
A tool to classify journal abstracts with pathway content.

Jupyter Notebook 0 MIT 1 1 0 Updated Jun 14, 2022
cpath2 Public
Biological pathway data integration and access platform (Pathway Commons)

Java 4 MIT 5 11 0 Updated Jun 10, 2022
classifier-pipeline Public
A workflow for classifying articles

Python 0 MIT 0 0 0 Updated Jun 10, 2022
semantic-search Public
A simple semantic search engine for scientific papers.

Python 23 MIT 1 6 2 Updated Jun 8, 2022

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