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@PathwayCommons

Pathway Commons

A network biology resource for biological pathway information and software.

Pinned

  1. about Public

    Pathway Commons Home Page (/about/)

    CSS 3 2

  2. cpath2 Public

    Biological pathway data integration and access platform (Pathway Commons)

    Java 4 5

  3. guide Public

    Resource for pathway analysis and Pathway Commons

    HTML 4

  4. factoid Public

    A project to capture biological pathway data from academic papers

    JavaScript 22 7

  5. app-ui Public

    Web UI for accessing Pathway Commons data

    JavaScript 13

  6. CyPath2 Public

    Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.

    Java 2 4

Repositories

  • factoid Public

    A project to capture biological pathway data from academic papers

    JavaScript 22 MIT 7 14 1 Updated May 14, 2022
  • pathway-abstract-classifier Public

    A tool to classify journal abstracts with pathway content.

    Jupyter Notebook 0 MIT 1 0 0 Updated May 13, 2022
  • ncbiutils Public

    A wrapper for retrieving records from PubMed

    Python 0 MIT 0 1 0 Updated May 12, 2022
  • chibe Public

    Pathway visualization and analysis tool for Pathway Commons and other BioPAX data

    Java 9 EPL-1.0 10 13 1 Updated Apr 22, 2022
  • semantic-search Public

    A simple semantic search engine for scientific papers.

    Python 23 MIT 1 6 1 Updated Apr 6, 2022
  • app-ui Public

    Web UI for accessing Pathway Commons data

    JavaScript 0 MIT 13 12 1 Updated Jan 22, 2022
  • rethinkdb-backup Public

    Enables a client to dump and retrieve data from a RethinkDB instance

    JavaScript 0 MIT 0 0 0 Updated Jan 12, 2022
  • CyPath2 Public

    Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.

    Java 2 LGPL-2.1 4 4 1 Updated Dec 19, 2021
  • grounding-search Public

    A biological entity grounding search service

    JavaScript 3 MIT 5 7 0 Updated Dec 17, 2021
  • factoid-converters Public

    Web services for Factoid project to convert between JSON, BioPAX, SBGN data formats

    Java 2 MIT 3 1 0 Updated Oct 9, 2021

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