Pathway Commons
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Pinned repositories
Web UI for accessing Pathway Commons data
Biological pathway data integration and access platform (Pathway Commons)
Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.
Resource for pathway analysis and Pathway Commons
The Web API Docs App
A project to digitally capture biological data from academic papers
Pathway Commons Home Page (/about/)
Pathway Commons binary SIF graph web service
Pathway visualization and analysis tool for Pathway Commons and other BioPAX data
An npm module that converts xml based SBGN files to JSON for Cytoscape.js
Comparative Toxicogenomics Database (CTD) to BioPAX Level3 data converter.
Modeling and querying support for SIF graphs
bionlpner Archived
Bio NLP web services
A docker version of the clulab/reach webservices
Pathway Commons Bio Network Visualizer
A library to facilitate access to the Pathway Commons 2 API
pathway-cards
Forked from onursumer/oncosignSBML to BioPAX Level3 converter, specific to the Recon2 data.
View biological networks via Cytoscape.js and sbgn-ml
pathways-search Archived
A web app to search pathways in Pathway Commons
MSigDB (human C3 TFT motif gene sets only) to BioPAX Level3 data converter.
To convert from TRANSFAC GSEA/GMT format - transcription factors and their predicted targets - to BioPAX L3.
networks Archived
A web app to search sub-networks in Pathway Commons
chilay-sbgn
Forked from iVis-at-Bilkent/chilayChisio Layout (ChiLay) graph layout framework for SBGN
DrugBank to BioPAX Level3 data converter.
NodeJS Tool for scraping Pathway Commons for statistical analysis
nms Archived
Neighborhood Maps Server for cPath1 (PC)
