GitHub is home to over 28 million developers working together. Join them to grow your own development teams, manage permissions, and collaborate on projects.
Pathway Commons Home Page (/about/)
Biological pathway data integration and access platform (Pathway Commons)
Resource for pathway analysis and Pathway Commons
A project to digitally capture biological data from academic papers
Web UI for accessing Pathway Commons data
Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.
Pathway Commons binary SIF graph web service
Web services for Factoid project to convert between JSON, BioPAX, SBGN data formats
Pathway visualization and analysis tool for Pathway Commons and other BioPAX data
The Web API Docs App
Pathway Commons Bio Network Visualizer
An npm module that converts xml based SBGN files to JSON for Cytoscape.js
Comparative Toxicogenomics Database (CTD) to BioPAX Level3 data converter.
Modeling and querying support for SIF graphs
A docker version of the clulab/reach webservices
A library to facilitate access to the Pathway Commons 2 API
SBML to BioPAX Level3 converter, specific to the Recon2 data.
View biological networks via Cytoscape.js and sbgn-ml
A web app to search pathways in Pathway Commons
MSigDB (human C3 TFT motif gene sets only) to BioPAX Level3 data converter.
To convert from TRANSFAC GSEA/GMT format - transcription factors and their predicted targets - to BioPAX L3.
A web app to search sub-networks in Pathway Commons
Chisio Layout (ChiLay) graph layout framework for SBGN
DrugBank to BioPAX Level3 data converter.
NodeJS Tool for scraping Pathway Commons for statistical analysis
Neighborhood Maps Server for cPath1 (PC)