Pathway Commons

A biological entity grounding search service

Web UI for accessing Pathway Commons data

A project to digitally capture biological data from academic papers

Pathway visualization and analysis tool for Pathway Commons and other BioPAX data

Resource for pathway analysis and Pathway Commons

Biological pathway data integration and access platform (Pathway Commons)

Pathway Commons Home Page (/about/)

Pathway Commons Bio Network Visualizer

DrugBank to BioPAX Level3 data converter.

Pathway Commons binary SIF graph web service

Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.

An npm module that converts xml based SBGN files to JSON for Cytoscape.js

Comparative Toxicogenomics Database (CTD) to BioPAX Level3 data converter.

Modeling and querying support for SIF graphs

A docker version of the clulab/reach webservices

A library to facilitate access to the Pathway Commons 2 API

SBML to BioPAX Level3 converter, specific to the Recon2 data.

View biological networks via Cytoscape.js and sbgn-ml

MSigDB (human C3 TFT motif gene sets only) to BioPAX Level3 data converter.

To convert from TRANSFAC GSEA/GMT format - transcription factors and their predicted targets - to BioPAX L3.

NodeJS Tool for scraping Pathway Commons for statistical analysis