Pathway Commons

Web UI for accessing Pathway Commons data

Pathway Commons binary SIF graph web service

A project to digitally capture biological data from academic papers

Biological pathway data integration and access platform (Pathway Commons)

Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.

Pathway visualization and analysis tool for Pathway Commons and other BioPAX data

Pathway Commons Bio Network Visualizer

Resource for pathway analysis and Pathway Commons

Pathway Commons Home Page (/about/)

An npm module that converts xml based SBGN files to JSON for Cytoscape.js

Comparative Toxicogenomics Database (CTD) to BioPAX Level3 data converter.

Modeling and querying support for SIF graphs

A docker version of the clulab/reach webservices

A library to facilitate access to the Pathway Commons 2 API

SBML to BioPAX Level3 converter, specific to the Recon2 data.

View biological networks via Cytoscape.js and sbgn-ml

MSigDB (human C3 TFT motif gene sets only) to BioPAX Level3 data converter.

To convert from TRANSFAC GSEA/GMT format - transcription factors and their predicted targets - to BioPAX L3.

DrugBank to BioPAX Level3 data converter.

NodeJS Tool for scraping Pathway Commons for statistical analysis