Pathway Commons

A network biology resource for biological pathway information and software.

grounding-search Public
A biological entity grounding search service

JavaScript 3 MIT 5 6 1 Updated Oct 24, 2021
semantic-search Public
A simple semantic search engine for scientific papers.

Python 21 MIT 0 8 3 Updated Oct 15, 2021
factoid-converters Public
Web services for Factoid project to convert between JSON, BioPAX, SBGN data formats

Java 2 MIT 3 1 0 Updated Oct 9, 2021
factoid Public
A project to capture biological pathway data from academic papers

JavaScript 20 MIT 7 12 10 Updated Sep 16, 2021
cpath2 Public
Biological pathway data integration and access platform (Pathway Commons)

Java 4 MIT 5 10 0 Updated Aug 26, 2021
rethinkdb-backup Public
Enables a client to dump and retrieve data from a RethinkDB instance

JavaScript 0 MIT 0 0 0 Updated Jul 21, 2021
chibe Public
Pathway visualization and analysis tool for Pathway Commons and other BioPAX data

Java 8 EPL-1.0 10 13 0 Updated Jul 14, 2021
pubmed-dl Public

Python 0 MIT 0 1 0 Updated Feb 10, 2021
cytoscape-sbgn-stylesheet Public
View biological networks via Cytoscape.js and sbgn-ml

JavaScript 34 MIT 19 13 1 Updated Feb 9, 2021
app-ui Public
Web UI for accessing Pathway Commons data

JavaScript 0 MIT 13 12 1 Updated Dec 21, 2020

Pinned