Pathway Commons
- Toronto, New York City, Boston, Portland
- http://www.pathwaycommons.org
- pathway-commons-help@googlegroups.com
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Pinned repositories
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factoid
A project to digitally capture biological data from academic papers
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app-ui
Web UI for accessing Pathway Commons data
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cpath2
Biological pathway data integration and access platform (Pathway Commons)
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pcviz
Pathway Commons Bio Network Visualizer
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grounding-search
A biological entity grounding search service
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ctd-to-biopax
Comparative Toxicogenomics Database (CTD) to BioPAX Level3 data converter.
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drugbank-to-biopax
DrugBank to BioPAX Level3 data converter.
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chibe
Pathway visualization and analysis tool for Pathway Commons and other BioPAX data
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cytoscape-sbgn-stylesheet
View biological networks via Cytoscape.js and sbgn-ml
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guide
Resource for pathway analysis and Pathway Commons
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about
Pathway Commons Home Page (/about/)
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factoid-converters
Forked from metincansiper/factoid-to-biopax-serverWeb services for Factoid project to convert between JSON, BioPAX, SBGN data formats
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sifgraph-server
Pathway Commons binary SIF graph web service
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CyPath2
Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.
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pcapi Archived
The Web API Docs App
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sbgnml-to-cytoscape
An npm module that converts xml based SBGN files to JSON for Cytoscape.js
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sifgraph
Modeling and querying support for SIF graphs
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reach-docker
A docker version of the clulab/reach webservices
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pathway-commons-client
A library to facilitate access to the Pathway Commons 2 API
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pathway-cards
Forked from onursumer/oncosign -
reconx-to-biopax
SBML to BioPAX Level3 converter, specific to the Recon2 data.
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pathways-search Archived
A web app to search pathways in Pathway Commons
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msigdb-to-biopax
MSigDB (human C3 TFT motif gene sets only) to BioPAX Level3 data converter.
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transfac-to-biopax
To convert from TRANSFAC GSEA/GMT format - transcription factors and their predicted targets - to BioPAX L3.
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networks Archived
A web app to search sub-networks in Pathway Commons
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chilay-sbgn
Forked from iVis-at-Bilkent/chilayChisio Layout (ChiLay) graph layout framework for SBGN
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path-stat
NodeJS Tool for scraping Pathway Commons for statistical analysis
