@PathwayCommons

Pathway Commons

A network biology resource for biological pathway information and software.

Pinned repositories

  1. about

    Pathway Commons Home Page (/about/)

    CSS 2 1

  2. cpath2

    Biological pathway data integration and access platform (Pathway Commons)

    Java 2 3

  3. guide

    Resource for pathway analysis and Pathway Commons

    HTML 3

  4. pathway-commons-client

    A library to facilitate access to the Pathway Commons 2 API

    JavaScript 1 1

  5. factoid

    A project to digitally capture biological data from academic papers

    JavaScript 12 6

  6. app-ui

    JavaScript 9

  • Biological pathway data integration and access platform (Pathway Commons)

    Java 2 3 MIT Updated Apr 23, 2018
  • JavaScript 9 MIT 8 issues need help Updated Apr 23, 2018
  • A project to digitally capture biological data from academic papers

    JavaScript 12 6 Updated Apr 23, 2018
  • Resource for pathway analysis and Pathway Commons

    HTML 3 Updated Apr 20, 2018
  • Pathway visualization and analysis tool for Pathway Commons and other BioPAX data

    Java 4 7 EPL-1.0 Updated Apr 17, 2018
  • Pathway Commons Home Page (/about/)

    CSS 2 1 Updated Apr 17, 2018
  • A docker version of the clulab/reach webservices

    Shell Updated Apr 12, 2018
  • Java 3 3 LGPL-3.0 1 issue needs help Updated Apr 8, 2018
  • SBML to BioPAX Level3 converter, specific to the Recon2 data.

    Java Updated Apr 4, 2018
  • Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.

    Java 1 4 LGPL-2.1 Updated Mar 5, 2018
  • View biological networks via Cytoscape.js and sbgn-ml

    JavaScript 2 MIT Updated Feb 15, 2018
  • A web app to search pathways in Pathway Commons

    JavaScript 2 4 MIT Updated Jan 22, 2018
  • Updated Nov 2, 2017
  • A library to facilitate access to the Pathway Commons 2 API

    JavaScript 1 1 MIT Updated Nov 1, 2017
  • MSigDB (human C3 TFT motif gene sets only) to BioPAX Level3 data converter.

    Java Updated Nov 1, 2017
  • To convert from TRANSFAC GSEA/GMT format - transcription factors and their predicted targets - to BioPAX L3.

    Updated Oct 19, 2017
  • An npm module that converts xml based SBGN files to JSON for Cytoscape.js

    JavaScript 1 MIT Updated Oct 10, 2017
  • Pathway Commons Bio Network Visualizer

    JavaScript 5 2 LGPL-3.0 Updated Sep 21, 2017
  • JavaScript MIT Updated Sep 13, 2017
  • networks Archived

    A web app to search sub-networks in Pathway Commons

    JavaScript MIT Updated Aug 21, 2017
  • The Web API Docs App

    JavaScript Updated Aug 11, 2017
  • Chisio Layout (ChiLay) graph layout framework for SBGN

    Java 2 Updated Aug 3, 2017
  • Comparative Toxicogenomics Database (CTD) to BioPAX Level3 data converter.

    Java Updated Jun 27, 2017
  • DrugBank to BioPAX Level3 data converter.

    Java Updated Jun 26, 2017
  • NodeJS Tool for scraping Pathway Commons for statistical analysis

    JavaScript Updated May 23, 2017
  • nms Archived

    Neighborhood Maps Server for cPath1 (PC)

    Java Updated May 3, 2017
  • Modeling and querying support for SIF graphs

    Java LGPL-3.0 Updated Apr 17, 2017
  • Programming task for software developers

    JavaScript 2 Updated Feb 23, 2017
  • The pathway resource list

    Perl 1 Updated Feb 2, 2017
  • MiRTarBase to BioPAX Level3 data converter.

    Java Updated Dec 16, 2016