@PathwayCommons

Pathway Commons

A network biology resource for biological pathway information and software.

Pinned repositories

  1. about

    Pathway Commons Home Page (/about/)

    CSS 2 2

  2. cpath2

    Biological pathway data integration and access platform (Pathway Commons)

    Java 2 4

  3. guide

    Resource for pathway analysis and Pathway Commons

    HTML 3

  4. factoid

    A project to digitally capture biological data from academic papers

    JavaScript 13 6

  5. app-ui

    Web UI for accessing Pathway Commons data

    JavaScript 13

  6. CyPath2

    Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.

    Java 1 4

  • Web UI for accessing Pathway Commons data

    JavaScript 13 MIT Updated Oct 15, 2018
  • A project to digitally capture biological data from academic papers

    JavaScript 13 6 Updated Oct 11, 2018
  • Biological pathway data integration and access platform (Pathway Commons)

    Java 2 4 MIT Updated Oct 1, 2018
  • Web services for Factoid project to convert between JSON, BioPAX, SBGN data formats

    Java 1 1 MIT Updated Sep 20, 2018
  • Pathway visualization and analysis tool for Pathway Commons and other BioPAX data

    Java 4 7 EPL-1.0 Updated Sep 19, 2018
  • pcapi Archived

    The Web API Docs App

    JavaScript Updated Sep 8, 2018
  • Pathway Commons Bio Network Visualizer

    JavaScript 5 2 Updated Aug 2, 2018
  • Resource for pathway analysis and Pathway Commons

    HTML 3 Updated Aug 2, 2018
  • Java MIT Updated Jul 19, 2018
  • Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.

    Java 1 4 LGPL-2.1 Updated Jul 19, 2018
  • Pathway Commons Home Page (/about/)

    CSS 2 2 Updated Jul 11, 2018
  • Pathway Commons binary SIF graph web service

    Java 1 MIT Updated Jul 10, 2018
  • An npm module that converts xml based SBGN files to JSON for Cytoscape.js

    JavaScript 1 MIT Updated Jun 19, 2018
  • Comparative Toxicogenomics Database (CTD) to BioPAX Level3 data converter.

    Java 1 Updated Jun 14, 2018
  • Modeling and querying support for SIF graphs

    Java MIT Updated May 31, 2018
  • A docker version of the clulab/reach webservices

    Shell Updated May 29, 2018
  • A library to facilitate access to the Pathway Commons 2 API

    JavaScript 2 1 MIT Updated May 23, 2018
  • Java 3 3 LGPL-3.0 1 issue needs help Updated Apr 8, 2018
  • SBML to BioPAX Level3 converter, specific to the Recon2 data.

    Java Updated Apr 4, 2018
  • View biological networks via Cytoscape.js and sbgn-ml

    JavaScript 2 MIT Updated Feb 15, 2018
  • A web app to search pathways in Pathway Commons

    JavaScript 2 4 MIT Updated Jan 22, 2018
  • Updated Nov 2, 2017
  • MSigDB (human C3 TFT motif gene sets only) to BioPAX Level3 data converter.

    Java Updated Nov 1, 2017
  • To convert from TRANSFAC GSEA/GMT format - transcription factors and their predicted targets - to BioPAX L3.

    Updated Oct 19, 2017
  • JavaScript MIT Updated Sep 13, 2017
  • networks Archived

    A web app to search sub-networks in Pathway Commons

    JavaScript MIT Updated Aug 21, 2017
  • Chisio Layout (ChiLay) graph layout framework for SBGN

    Java 2 Updated Aug 3, 2017
  • DrugBank to BioPAX Level3 data converter.

    Java Updated Jun 26, 2017
  • NodeJS Tool for scraping Pathway Commons for statistical analysis

    JavaScript Updated May 23, 2017
  • nms Archived

    Neighborhood Maps Server for cPath1 (PC)

    Java Updated May 3, 2017
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