Pathway Commons

A network biology resource for biological pathway information and software.

factoid Public
A project to capture biological pathway data from academic papers

JavaScript 22 MIT 7 14 1 Updated May 14, 2022
pathway-abstract-classifier Public
A tool to classify journal abstracts with pathway content.

Jupyter Notebook 0 MIT 1 0 0 Updated May 13, 2022
ncbiutils Public
A wrapper for retrieving records from PubMed

Python 0 MIT 0 1 0 Updated May 12, 2022
chibe Public
Pathway visualization and analysis tool for Pathway Commons and other BioPAX data

Java 9 EPL-1.0 10 13 1 Updated Apr 22, 2022
semantic-search Public
A simple semantic search engine for scientific papers.

Python 23 MIT 1 6 1 Updated Apr 6, 2022
app-ui Public
Web UI for accessing Pathway Commons data

JavaScript 0 MIT 13 12 1 Updated Jan 22, 2022
rethinkdb-backup Public
Enables a client to dump and retrieve data from a RethinkDB instance

JavaScript 0 MIT 0 0 0 Updated Jan 12, 2022
CyPath2 Public
Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.

Java 2 LGPL-2.1 4 4 1 Updated Dec 19, 2021
grounding-search Public
A biological entity grounding search service

JavaScript 3 MIT 5 7 0 Updated Dec 17, 2021
factoid-converters Public
Web services for Factoid project to convert between JSON, BioPAX, SBGN data formats

Java 2 MIT 3 1 0 Updated Oct 9, 2021

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