Pathway Commons
Pinned repositories
A web app to search pathways in Pathway Commons
BioPAX/PSI-MI biological pathway data integration and access platform
Pathway Commons Bio Network Visualizer
Resource for pathway analysis and Pathway Commons
A project to digitally capture biological data from academic papers
View biological networks via Cytoscape.js and sbgn-ml
pathway-cards
Forked from onursumer/oncosignReusable React.js components for Pathway Commons apps
A library to facilitate access to the Pathway Commons 2 API
A web app to search sub-networks in Pathway Commons
The Web API Docs App
Pathway Commons Home Page (/about/)
Pathway visualization and analysis tool for Pathway Commons and other BioPAX data
chilay-sbgn
Forked from iVis-at-Bilkent/chilayChisio Layout (ChiLay) graph layout framework for SBGN
Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.
Comparative Toxicogenomics Database (CTD) to BioPAX Level3 data converter.
DrugBank to BioPAX Level3 data converter.
MSigDB (human C3 TFT motif gene sets only) to BioPAX Level3 data converter.
An npm module that converts xml based SBGN files to JSON for Cytoscape.js
NodeJS Tool for scraping Pathway Commons for statistical analysis
Neighborhood Maps Server for cPath1 (PC)
Modeling and querying support for SIF graphs
SBML to BioPAX Level3 converter, specific to the Recon2 data.
Programming task for software developers
The pathway resource list
A skeleton for Pathway Commons JS applications
MiRTarBase to BioPAX Level3 data converter.
cPath: old Pathway Commons portal engine
