diff --git a/src/ontology/pato-edit.obo b/src/ontology/pato-edit.obo index 402e0dcd..77ec023e 100644 --- a/src/ontology/pato-edit.obo +++ b/src/ontology/pato-edit.obo @@ -1514,7 +1514,7 @@ is_obsolete: true [Term] id: PATO:0000261 name: maturity -def: "A quality of a single physical entity which is held by a bearer when the latter exhibits complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] +def: "A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] subset: attribute_slim is_a: PATO:0001995 ! organismal quality @@ -13334,6 +13334,7 @@ relationship: is_opposite_of PATO:0001892 ! decreased odor [Term] id: PATO:0001894 name: phenotypic sex +def: "An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics." [] subset: attribute_slim is_a: PATO:0000047 ! biological sex @@ -14313,7 +14314,6 @@ id: PATO:0002019 name: aplastic growth def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms does not occur." [PATOC:MAH] synonym: "agenesis" NARROW [] -synonym: "dysgenesis" NARROW [] is_a: PATO:0001433 ! growth quality of occurrent [Term] @@ -20213,7 +20213,7 @@ property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T04:10:53Z xsd:da [Term] id: PATO:0040003 name: pathogenicity -def: "The ability of a pathogen to produce an infectious disease or disorder in an another organism." [https://orcid.org/0000-0001-6330-7526] +def: "The ability of a pathogen to produce an infectious disease or disorder in an another organism." [https://orcid.org/0000-0001-8941-3984] is_a: PATO:0001995 ! organismal quality property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:24:52Z xsd:dateTime @@ -20234,6 +20234,105 @@ is_a: PATO:0000052 ! shape property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:09:59Z xsd:dateTime +[Term] +id: PATO:0040007 +name: shell shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:12:47Z xsd:dateTime + +[Term] +id: PATO:0040008 +name: fringed +def: "A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/fringe] +is_a: PATO:0002267 ! edge shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:15:10Z xsd:dateTime + +[Term] +id: PATO:0040009 +name: bowl shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0002008 ! concave 3-D shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:17:01Z xsd:dateTime + +[Term] +id: PATO:0040010 +name: mobile relative to +def: "Mobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] +comment: For example, distinct anteroposterior mobility of palatine relative to mesethmoid. +is_a: PATO:0000004 ! mobility +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:20:08Z xsd:dateTime + +[Term] +id: PATO:0040011 +name: immobile relative to +def: "Immobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] +comment: For example: distinct anteroposterior immobility of palatine relative to mesethmoid. +is_a: PATO:0000004 ! mobility +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:21:07Z xsd:dateTime + +[Term] +id: PATO:0040012 +name: plug like +def: "A shape that is in the form of a plug, being tube-like and expanded on one end." [https://orcid.org/0000-0003-3162-7490] +synonym: "plug shaped" EXACT [] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:24:41Z xsd:dateTime + +[Term] +id: PATO:0040013 +name: dorsomedial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially." [https://orcid.org/0000-0003-3162-7490] +synonym: "dorsomedially directed" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:27:57Z xsd:dateTime + +[Term] +id: PATO:0040014 +name: band-like +def: "A shape that is in the form of a narrow strip encircling an object." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/band] +synonym: "band like" EXACT [] +synonym: "strip like" EXACT [] +synonym: "strip-like" EXACT [] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:31:51Z xsd:dateTime + +[Term] +id: PATO:0040015 +name: trough shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape." [http://www.dictionary.com/browse/trough, https://orcid.org/0000-0003-3162-7490] +synonym: "trough like" EXACT [] +synonym: "trough-like" EXACT [] +synonym: "trough-shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:35:51Z xsd:dateTime + +[Term] +id: PATO:0040016 +name: pentagonal +def: "A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/pentagonal] +is_a: PATO:0002006 ! 2-D shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:39:48Z xsd:dateTime + +[Term] +id: PATO:0040017 +name: dysplastic growth +def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal." [https://www.cancer.gov/publications/dictionaries/cancer-terms/def/dysplasia] +synonym: "dysgenesis" NARROW [] +is_a: PATO:0001433 ! growth quality of occurrent +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T19:01:51Z xsd:dateTime + [Term] id: PATO:0045000 name: normal rate