diff --git a/DESCRIPTION b/DESCRIPTION
index c735350..9b37dda 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: archivist
-Version: 1.9.7.0
+Version: 1.9.7.1
 Type: Package
 Title: Tools for Storing, Restoring and Searching for R Objects
 Authors@R: c(
diff --git a/NAMESPACE b/NAMESPACE
index edf8067..d076946 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -12,19 +12,15 @@ export(aformat)
 export(ahistory)
 export(alink)
 export(aoptions)
-export(archive)
 export(aread)
 export(asearch)
 export(asession)
 export(cache)
-export(cloneGithubRepo)
 export(copyLocalRepo)
 export(copyRemoteRepo)
-export(createEmptyGithubRepo)
 export(createEmptyLocalRepo)
 export(createEmptyRepo)
 export(createMDGallery)
-export(deleteGithubRepo)
 export(deleteLocalRepo)
 export(deleteRepo)
 export(getRemoteHook)
@@ -34,8 +30,6 @@ export(loadFromLocalRepo)
 export(loadFromRemoteRepo)
 export(multiSearchInLocalRepo)
 export(multiSearchInRemoteRepo)
-export(pullRepo)
-export(pushRepo)
 export(rmFromRepo)
 export(saveToRepo)
 export(searchInLocalRepo)
@@ -55,8 +49,6 @@ export(zipLocalRepo)
 export(zipRemoteRepo)
 import(httr)
 importClassesFrom(RSQLite,SQLiteDriver)
-importClassesFrom(git2r,cred_user_pass)
-importClassesFrom(git2r,git_repository)
 importFrom(DBI,dbConnect)
 importFrom(DBI,dbDisconnect)
 importFrom(DBI,dbDriver)
@@ -73,20 +65,8 @@ importFrom(grDevices,png)
 importFrom(graphics,barplot)
 importFrom(graphics,par)
 importFrom(graphics,plot)
-importFrom(jsonlite,unbox)
 importFrom(lubridate,now)
 importFrom(magrittr,"%>%")
 importFrom(utils,head)
 importFrom(utils,tail)
 importFrom(utils,zip)
-importMethodsFrom(git2r,add)
-importMethodsFrom(git2r,clone)
-importMethodsFrom(git2r,commit)
-importMethodsFrom(git2r,cred_user_pass)
-importMethodsFrom(git2r,discover_repository)
-importMethodsFrom(git2r,in_repository)
-importMethodsFrom(git2r,init)
-importMethodsFrom(git2r,pull)
-importMethodsFrom(git2r,push)
-importMethodsFrom(git2r,remote_add)
-importMethodsFrom(git2r,repository)
diff --git a/R/createEmptyRepo.R b/R/createEmptyRepo.R
index 975aa5b..4c91cbb 100644
--- a/R/createEmptyRepo.R
+++ b/R/createEmptyRepo.R
@@ -4,13 +4,8 @@
 #'
 #' @description
 #' \code{createEmptyLocalRepo} creates an empty \link{Repository} in the given directory in which archived artifacts will be stored.
-#' \code{createEmptyGithubRepo} creates a new GitHub repository with an empty \pkg{archivist}-like \link{Repository} and
-#' also creates a local \code{Repository} with \code{createEmptyLocalRepo} which is git-synchronized with
-#' new GitHub repository. \code{createEmptyRepo} is a wrapper around \code{createEmptyLocalRepo} and \code{createEmptyGithubRepo}
-#'  functions and by default triggers \code{createEmptyLocalRepo} to maintain consistency with the previous \pkg{archivist} versions (<1.8.6.0)
-#'  where there was only \code{createEmptyRepo} which created local \code{Repository}. To learn more about
-#'  \code{Archivist Integration With GitHub API} visit \link{archivist-github-integration} (\link{agithub}).
-#' 
+#' \code{createEmptyRepo} is a wrapper around \code{createEmptyLocalRepo} to maintain consistency with the previous \pkg{archivist} versions (<1.8.6.0)
+#'  where there was only \code{createEmptyRepo} which created Local \code{Repository}.  
 #' 
 #' @details
 #' At least one Repository must be initialized before using other functions from the \pkg{archivist} package. 
@@ -35,7 +30,6 @@
 #' After every \code{saveToRepo} call the database is refreshed. As a result, the artifact is available 
 #' immediately in \code{backpack.db} database for other collaborators.
 #' 
-#' @param type A character. Whether to use \code{Local} or \code{Github} version while using \code{createEmptyRepo} wrapper.
 #' 
 #' @param repoDir A character that specifies the directory for the Repository which is to be made. While working with GitHub Repository, this will
 #' be the directory of the synchronized Local Repository, in which the new Local Repository will be created (is \code{NULL} then is the same as \code{repo}).
@@ -47,19 +41,6 @@
 #' @param default If \code{default = TRUE} then \code{repoDir} (\code{repo}) is set as default local repository 
 #' (for GitHub version also the \code{user} is set as default GitHub user).
 #' 
-#' @param repo While working with a Github repository. A character denoting new GitHub repository name. White spaces will be substitued with a dash.
-#' @param github_token While working with a Github repository. An OAuth GitHub Token created with the \link{oauth2.0_token} function. See \link{archivist-github-integration}.
-#' Can be set globally with \code{aoptions("github_token", github_token)}.
-#' @param repoDescription While working with a Github repository. A character specifing the new GitHub repository description.
-#' @param user While working with a Github repository. A character denoting GitHub user name. Can be set globally with \code{aoptions("user", user)}.
-#'  See \link{archivist-github-integration}.
-#' @param password While working with a Github repository. A character denoting GitHub user password. Can be set globally with \code{aoptions("password", password)}.
-#' See \link{archivist-github-integration}.
-#' @param readmeDescription While working with a Github repository. A character of the content of \code{README.md} file. By default a description of \link{Repository}.
-#' Can be set globally with \code{aoptions("readmeDescription", readmeDescription)}. In order to omit 
-#' \code{README.md} file set \code{aoptions("readmeDescription", NULL)}.
-#' @param response A logical value. Should the GitHub API response be returned.
-#' 
 #' @author 
 #' Marcin Kosinski, \email{m.p.kosinski@@gmail.com}
 #'
@@ -92,94 +73,9 @@
 #' 
 #' rm( exampleRepoDir )
 #' 
-#' ## GitHub version
-#' 
-#' library(httr)
-#' myapp <- oauth_app("github",
-#'                    key = app_key,
-#'                    secret = app_secret)
-#' github_token <- oauth2.0_token(oauth_endpoints("github"),
-#'                                 myapp,
-#'                                 scope = "public_repo")
-#' aoptions("github_token", github_token)
-#' aoptions("user", user)
-#' aoptions("password", password)
-#' 
-#' createEmptyGithubRepo("Museum")
-#' createEmptyGithubRepo("Museum-Extras", response = TRUE)
-#' createEmptyGithubRepo("Gallery", readmeDescription = NULL)
-#' createEmptyGithubRepo("Landfill", 
-#'         repoDescription = "My models and stuff") 
-#' createEmptyGithubRepo("MuseumYYYY", repoDir = "Museum_YY")
-#'         
-#'         
-#'         
-#' # empty Github Repository creation
-#' 
-#' library(httr)
-#' myapp <- oauth_app("github",
-#'                    key = app_key,
-#'                    secret = app_secret)
-#' github_token <- oauth2.0_token(oauth_endpoints("github"),
-#'                                myapp,
-#'                                scope = "public_repo")
-#' # setting options                              
-#' aoptions("github_token", github_token)
-#' aoptions("user", user)
-#' aoptions("password", password)
-#' 
-#' createEmptyGithubRepo("archive-test4", default = TRUE)
-#' ## artifact's archiving
-#' przyklad <- 1:100
-#' 
-#' # archiving
-#' archive(przyklad) -> md5hash_path
-#' 
-#' ## proof that artifact is really archived
-#' showGithubRepo() # uses options from setGithubRepo
-#' # let's remove przyklad
-#' rm(przyklad)
-#' # and load it back from md5hash_path
-#' aread(md5hash_path)
-#' 
-#' 
-#' # clone example
-#' unlink("archive-test", recursive = TRUE)
-#' cloneGithubRepo('https://github.com/MarcinKosinski/archive-test')
-#' setGithubRepo(aoptions("user"), "archive-test")
-#' data(iris)
-#' archive(iris)
-#' showGithubRepo()
 #' 
 #' }
 #' @family archivist
-#' @rdname createEmptyRepo
-#' @export
-createEmptyRepo <- function( repoDir, force = TRUE, default = FALSE,
-                             repo,
-                             github_token = aoptions("github_token"), 
-                             user = aoptions("user"),
-                             #user.email = aoptions("user.email"),
-                             password = aoptions("password"),
-                             repoDescription = aoptions("repoDescription"),
-                             readmeDescription = aoptions("readmeDescription"),
-                             response = aoptions("response"),
-                             type = "local"){
-  stopifnot(is.character(type) & length(type) ==1 & type %in% c("local", "github"))
-  if (type == "local") {
-    createEmptyLocalRepo(repoDir = repoDir, force = force, default = default)
-  } else {
-    createEmptyGithubRepo(repo = repo,
-                          github_token = github_token,
-                          repoDir = repoDir,
-                          user = user,
-                          password = password,
-                          repoDescription = repoDescription,
-                          readmeDescription = readmeDescription,
-                          response = response, default = default)
-  }
-  
-}
 
 #' @rdname createEmptyRepo
 #' @export
@@ -234,113 +130,7 @@ createEmptyLocalRepo <- function( repoDir, force = TRUE, default = FALSE ){
 
 #' @rdname createEmptyRepo
 #' @export
-createEmptyGithubRepo <- function(repo,
-                                  github_token = aoptions("github_token"), 
-                                  user = aoptions("user"),
-                                  repoDir = NULL,
-                                  #user.email = aoptions("user.email"),
-                                  password = aoptions("password"),
-                                  repoDescription = aoptions("repoDescription"),
-                                  readmeDescription = aoptions("readmeDescription"),
-                                  response = aoptions("response"),
-                                  default = FALSE){
-  stopifnot(is.character(repo) & length(repo) ==1)
-  stopifnot((is.character(repoDir) & length(repoDir) ==1) | (is.null(repoDir)))
-  stopifnot(is.character(repoDescription) & length(repoDescription) ==1)
-  #stopifnot(any(class(github_token) %in% "Token"))
-  stopifnot(is.character(user) & length(user)==1)
-  #stopifnot(is.character(user.email) & length(user.email)==1)
-  stopifnot(is.character(password) & length(password)==1)
-  stopifnot((is.character(readmeDescription) & length(readmeDescription)==1) |
-              is.null(readmeDescription))
-  stopifnot(is.logical(response) & length(response) ==1)
-  
-  
-  stopifnot( is.logical( default ), length( default ) == 1 )
-  repo <- gsub(pattern = " ", "-", repo)
-
-  shortPath <- FALSE
-  if(is.null(repoDir)) {
-    shortPath <- TRUE
-    repoDir <- repo
-  }
-  
-  # httr imports are in archivist-package.R file
-  # creating an empty GitHub Repository
-  POST(url = "https://api.github.com/user/repos",
-       encode = "json",
-       body = list(
-         name = jsonlite::unbox(repo),
-         description = jsonlite::unbox(repoDescription)
-       ),
-       config = httr::config(token = github_token)
-  ) -> resp
-  
-  
-  # git2r imports are in the archivist-package.R
-  #path <- repoDir
-  dir.create(repoDir)
-  
-  if (!shortPath){
-    dir.create(file.path(repoDir, repo))
-    repoDir_path <- file.path(repoDir, repo)
-  } else {
-    repoDir_path <- repo
-  }
-  
-  # initialize local git repository
-  # git init
-  repoDir_git2r <- init(repoDir_path)
-  
-  ## Create and configure a user
-  # git config - added to Note section
-  #git2r::config(repo, ...) # if about to use, the add to archivist-package.R
-  
-  # archivist-like Repository creation
-  createEmptyRepo(repoDir = repoDir_path)
-  file.create(file.path(repoDir_path, "gallery", ".gitkeep"))
-  # git add
-  if (!is.null(readmeDescription)){
-    file.create(file.path(repoDir_path, "README.md"))
-    writeLines(aoptions("readmeDescription"), file.path(repoDir_path, "README.md"))
-    add(repoDir_git2r, c("backpack.db", "gallery/", "README.md"))
-  } else {
-    add(repoDir_git2r, c("backpack.db", "gallery/"))
-  }
-  
-  # git commit
-  new_commit <- commit(repoDir_git2r, "archivist Repository creation.")
-  
-  # association of the local and GitHub git repository
-  # git add remote
-  remote_add(repoDir_git2r,
-             #"upstream2",
-             'origin',
-             file.path("https://github.com", user, paste0(repo, ".git")))
-  
-  # GitHub authorization
-  # to perform pull and push operations
-  cred <- git2r::cred_user_pass(user,
-                         password)
-  
-  # push archivist-like Repository to GitHub repository
-  push(repoDir_git2r,
-       #name = "upstream2",
-       refspec = "refs/heads/master",
-       credentials = cred)
-  
-  if (response){
-    return(resp)
-  }
-  
-  if (default) {
-    setLocalRepo(repoDir_path)
-    setGithubRepo(repo = repo, user = user)
-  }
-  
-}
-
-
+createEmptyRepo <- createEmptyLocalRepo
 
 addArtifact <- function( md5hash, name, dir ){
   # creates connection and driver
diff --git a/R/deleteRepo.R b/R/deleteRepo.R
index 0e0e665..a97cedc 100644
--- a/R/deleteRepo.R
+++ b/R/deleteRepo.R
@@ -5,36 +5,18 @@
 #' @description
 #' \code{deleteRepo} deletes the existing \link{Repository} from the given directory.
 #' As a result all artifacts from \code{gallery} folder are removed and database \code{backpack.db}
-#' is deleted. \code{deleteGithubRepo} can delete whole GitHub-Repository or only archivist-like Repository
-#' stored on a GitHub-Repository (then it requires more parameters to be specified).
-#' To learn more about  \code{Archivist Integration With GitHub API} visit
-#'  \link{archivist-github-integration} (\link{agithub}).
-#'  
+#' is deleted. 
+#'   
 #' @param repoDir A character that specifies the directory for the Repository
 #' which is to be deleted.
 #' @param deleteRoot A logical value that specifies if the repository root directory
 #' should be deleted for Local Repository or for GitHub whether to delete whole GitHub-Repository.
 #' @param unset A logical. If deleted \code{repoDir/repo} was set to be default Local/GitHub Repository
 #' and \code{unset} is TRUE, then \code{repoDir/repo} is unset as a default Local/GitHub Repository (\code{aoptions('repoDir/repo', NULL, T)}).
-#' @param repo While working with a Github repository. A character denoting GitHub repository name to be deleted.
-#' @param github_token While working with a Github repository. An OAuth GitHub Token created with the \link{oauth2.0_token} function. To delete GitHub Repository you
-#' need to have \code{delete_repo} scope set - see examples. See \link{archivist-github-integration}.
-#' Can be set globally with \code{aoptions("github_token", github_token)}.
-#' @param user While working with a Github repository. A character denoting GitHub user name. Can be set globally with \code{aoptions("user", user)}.
-#'  See \link{archivist-github-integration}.
-#' @param response A logical value. Should the GitHub API response be returned (only when \code{deleteRoot = TRUE}).
-#' @param subdir Only when \code{deleteRoot = FALSE}. Subdirectory in which the archivist-Repository is stored on a GitHub Repository.
-#' If it's in main directory, then specify to \code{NULL} (default).
-#' @param password Only when \code{deleteRoot = FALSE}. While working with a Github repository. A character denoting GitHub user password. Can be set globally with \code{aoptions("password", password)}.
-#' See \link{archivist-github-integration}.
-#' @param type A character. Whether to use \code{Local} or \code{Github} version while using \code{deleteRepo} wrapper.
 #' 
 #' @details
 #' 
-#' To delete GitHub Repository you
-#' need to have \code{delete_repo} scope set - see examples.
-#' 
-#' Since version 1.9 \code{deleteRepo} is a wrapper around \code{deleteLocalRepo} (in earlier versions deleteRepo) and \code{deleteGithubRepo}
+#' Since version 1.9 \code{deleteRepo} is a wrapper around \code{deleteLocalRepo} (in earlier versions deleteRepo) and \link[archivist.github]{deleteGitHubRepo}
 #'  functions and by default triggers \code{deleteLocalRepo} to maintain consistency with the previous \pkg{archivist} versions (<1.9.0)
 #'  where there was only \code{deleteRepo} which deleted local \code{Repository}. 
 #' 
@@ -53,25 +35,6 @@
 #' \dontrun{
 #' 
 #' ########################
-#' #### GitHub version ####
-#' ########################
-#' 
-#' library(httr)
-#' myapp <- oauth_app("github",
-#'                    key = app_key,
-#'                    secret = app_secret)
-#' github_token <- oauth2.0_token(oauth_endpoints("github"),
-#'                                 myapp,
-#'                                 scope = c("public_repo",
-#'                                           "delete_repo"))
-#' aoptions("github_token", github_token)
-#' aoptions("user", user)
-#' aoptions("password", password)
-#' 
-#' createEmptyGithubRepo("Museum")
-#' deleteGithubRepo(repo = "Museum", deleteRoot = TRUE, response = TRUE)
-#' 
-#' ########################
 #' #### Local version ####
 #' ########################
 #' 
@@ -185,39 +148,9 @@
 #' # or if aoptions('repodir') == repodir then 
 #' # deleteRepo(repoDir, deleteRoot = TRUE, unset = TRUE)
 #' 
-#' 
-#' 
-#' 
-#' 
 #' }
 #' 
 #' @family archivist
-#' @rdname deleteRepo
-#' @export
-deleteRepo <- function(repoDir, repo,
-                       github_token = aoptions("github_token"), 
-                       user = aoptions("user"),
-                       password = aoptions("password"),
-                       unset = FALSE, 
-                       deleteRoot = FALSE, 
-                       subdir = NULL, 
-                       response = aoptions("response"),
-                       type = "local"){
-  stopifnot(is.character(type) & length(type) ==1 & type %in% c("local", "github"))
-  if (type == "local") {
-    deleteLocalRepo(repoDir = repoDir, deleteRoot = deleteRoot,
-                    unset = unset)
-  } else {
-    deleteGithubRepo(repo = repo,
-                     github_token = github_token, 
-                     user = user,
-                     password = password,
-                     unset = unset, 
-                     deleteRoot = deleteRoot, 
-                     subdir = subdir,
-                     response = response)
-  }
-} 
 
 #' @rdname deleteRepo
 #' @export
@@ -247,57 +180,5 @@ deleteLocalRepo <- function(repoDir, deleteRoot = FALSE, unset = FALSE){
 
 #' @rdname deleteRepo
 #' @export
-deleteGithubRepo <- function(repo,
-                             github_token = aoptions("github_token"), 
-                             user = aoptions("user"),
-                             password = aoptions("password"),
-                             unset = FALSE, 
-                             deleteRoot = FALSE, 
-                             subdir = NULL, 
-                             response = aoptions("response")) {
-  stopifnot(is.character(repo) & length(repo) ==1)
-  stopifnot(is.character(user) & length(user)==1)
-
-  if (deleteRoot) {
-    DELETE(url = file.path("https://api.github.com/repos",user,repo),
-           config = httr::config(token = github_token)
-    ) -> resp
-  } else {
-    tempfile() -> tmpDir
-    # clone repo to tmpDir
-    cloneGithubRepo(file.path("https://github.com/", user, repo), 
-                    repoDir = tmpDir) -> clonedRepo
-    # remove archivist-repository
-    deleteLocalRepo(repoDir = file.path(tmpDir, 
-                                   ifelse(is.null(subdir), "", subdir)
-                                   ))
-    # add changes to git 
-    add(clonedRepo, c("backpack.db", "gallery/"))
-    # message
-    delete_commit <- commit(clonedRepo, "archivist Repository deletion.")
-    # GitHub authorization
-    # to perform pull and push operations
-    cred <- git2r::cred_user_pass(user,
-                                  password)
-    # push archivist-like Repository deletion to GitHub
-    push(clonedRepo,
-         refspec = "refs/heads/master",
-         credentials = cred)
-    
-  }
-  
-  if (unset) {
-    aoptions('repo', NULL,T)
-  }
-  
-  
-  if (response & deleteRoot){
-    return(resp)
-  }
-  
-  
-}
-
-
-
+deleteRepo <- deleteLocalRepo
 
diff --git a/man/Repository.Rd b/man/Repository.Rd
index 7995465..fa9a873 100644
--- a/man/Repository.Rd
+++ b/man/Repository.Rd
@@ -87,18 +87,15 @@ Other archivist: \code{\link{Tags}}, \code{\link{\%a\%}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/Tags.Rd b/man/Tags.Rd
index 883ee7f..8ce53d6 100644
--- a/man/Tags.Rd
+++ b/man/Tags.Rd
@@ -398,18 +398,16 @@ Other archivist: \code{\link{Repository}},
   \code{\link{\%a\%}}, \code{\link{addHooksToPrint}},
   \code{\link{addTagsRepo}}, \code{\link{aformat}},
   \code{\link{ahistory}}, \code{\link{alink}},
-  \code{\link{aoptions}}, \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
-  \code{\link{archivist-package}}, \code{\link{aread}},
-  \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
+  \code{\link{aoptions}}, \code{\link{archivist-package}},
+  \code{\link{aread}}, \code{\link{asearch}},
+  \code{\link{asession}}, \code{\link{cache}},
   \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/addHooksToPrint.Rd b/man/addHooksToPrint.Rd
index 13c7fa6..224ddf9 100644
--- a/man/addHooksToPrint.Rd
+++ b/man/addHooksToPrint.Rd
@@ -42,18 +42,16 @@ Other archivist: \code{\link{Repository}},
   \code{\link{Tags}}, \code{\link{\%a\%}},
   \code{\link{addTagsRepo}}, \code{\link{aformat}},
   \code{\link{ahistory}}, \code{\link{alink}},
-  \code{\link{aoptions}}, \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
-  \code{\link{archivist-package}}, \code{\link{aread}},
-  \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
+  \code{\link{aoptions}}, \code{\link{archivist-package}},
+  \code{\link{aread}}, \code{\link{asearch}},
+  \code{\link{asession}}, \code{\link{cache}},
   \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/addTagsRepo.Rd b/man/addTagsRepo.Rd
index 7415608..65786c6 100644
--- a/man/addTagsRepo.Rd
+++ b/man/addTagsRepo.Rd
@@ -98,18 +98,16 @@ Other archivist: \code{\link{Repository}},
   \code{\link{Tags}}, \code{\link{\%a\%}},
   \code{\link{addHooksToPrint}}, \code{\link{aformat}},
   \code{\link{ahistory}}, \code{\link{alink}},
-  \code{\link{aoptions}}, \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
-  \code{\link{archivist-package}}, \code{\link{aread}},
-  \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
+  \code{\link{aoptions}}, \code{\link{archivist-package}},
+  \code{\link{aread}}, \code{\link{asearch}},
+  \code{\link{asession}}, \code{\link{cache}},
   \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/aformat.Rd b/man/aformat.Rd
index f454322..dd81208 100644
--- a/man/aformat.Rd
+++ b/man/aformat.Rd
@@ -39,18 +39,16 @@ Other archivist: \code{\link{Repository}},
   \code{\link{Tags}}, \code{\link{\%a\%}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{ahistory}}, \code{\link{alink}},
-  \code{\link{aoptions}}, \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
-  \code{\link{archivist-package}}, \code{\link{aread}},
-  \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
+  \code{\link{aoptions}}, \code{\link{archivist-package}},
+  \code{\link{aread}}, \code{\link{asearch}},
+  \code{\link{asession}}, \code{\link{cache}},
   \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/ahistory.Rd b/man/ahistory.Rd
index 65cefaf..a0b7cd6 100644
--- a/man/ahistory.Rd
+++ b/man/ahistory.Rd
@@ -76,18 +76,16 @@ Other archivist: \code{\link{Repository}},
   \code{\link{Tags}}, \code{\link{\%a\%}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{alink}},
-  \code{\link{aoptions}}, \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
-  \code{\link{archivist-package}}, \code{\link{aread}},
-  \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
+  \code{\link{aoptions}}, \code{\link{archivist-package}},
+  \code{\link{aread}}, \code{\link{asearch}},
+  \code{\link{asession}}, \code{\link{cache}},
   \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/alink.Rd b/man/alink.Rd
index a14b440..e4d3f6b 100644
--- a/man/alink.Rd
+++ b/man/alink.Rd
@@ -90,18 +90,16 @@ Other archivist: \code{\link{Repository}},
   \code{\link{Tags}}, \code{\link{\%a\%}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
-  \code{\link{aoptions}}, \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
-  \code{\link{archivist-package}}, \code{\link{aread}},
-  \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
+  \code{\link{aoptions}}, \code{\link{archivist-package}},
+  \code{\link{aread}}, \code{\link{asearch}},
+  \code{\link{asession}}, \code{\link{cache}},
   \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/archive.Rd b/man/archive.Rd
deleted file mode 100644
index 09a5c4e..0000000
--- a/man/archive.Rd
+++ /dev/null
@@ -1,143 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/archive.R
-\name{archive}
-\alias{archive}
-\title{Archive Artifact to Local and GitHub Repository}
-\usage{
-archive(artifact, commitMessage = aoptions("commitMessage"),
-  repo = aoptions("repo"), user = aoptions("user"),
-  password = aoptions("password"), archiveData = aoptions("archiveData"),
-  archiveTags = aoptions("archiveTags"),
-  archiveMiniature = aoptions("archiveMiniature"),
-  archiveSessionInfo = aoptions("archiveSessionInfo"),
-  force = aoptions("force"), rememberName = aoptions("rememberName"), ...,
-  userTags = c(), silent = aoptions("silent"), ascii = aoptions("ascii"),
-  alink = aoptions("alink"))
-}
-\arguments{
-\item{artifact}{An artifact to be archived on Local and Github \link{Repository}.}
-
-\item{commitMessage}{A character denoting a message added to the commit while archiving \code{artifact} on GitHub Repository.
-By default, an artifact's \link{md5hash} is added to the commit message when it is specified to \code{NULL}.}
-
-\item{repo}{A character denoting GitHub repository name and synchronized local existing directory in which an artifact will be saved.}
-
-\item{user}{A character denoting GitHub user name. Can be set globally with \code{aoptions("user", user)}.
-See \link{archivist-github-integration}.}
-
-\item{password}{A character denoting GitHub user password. Can be set globally with \code{aoptions("password", password)}.
-See \link{archivist-github-integration}.}
-
-\item{archiveData}{A logical value denoting whether to archive the data from the \code{artifact}.}
-
-\item{archiveTags}{A logical value denoting whether to archive Tags from the \code{artifact}.}
-
-\item{archiveMiniature}{A logical value denoting whether to archive a miniature of the \code{artifact}.}
-
-\item{archiveSessionInfo}{A logical value denoting whether to archive the session info that describes the context in this given artifact was created.}
-
-\item{force}{A logical value denoting whether to archive \code{artifact} if it is already archived in
-a Repository.}
-
-\item{rememberName}{A logical value. Should not be changed by a user. It is a technical parameter.}
-
-\item{...}{Further arguments passed to \link{alink} function, when \code{alink} set to \code{TRUE} OR 
-graphical parameters denoting width and height of a miniature. See details. 
-Further arguments passed to \link{head}. See Details section in \link{saveToRepo} about \code{firtsRows} parameter}
-
-\item{userTags}{A character vector with Tags. These Tags will be added to the repository along with the artifact.}
-
-\item{silent}{If TRUE produces no warnings.}
-
-\item{ascii}{A logical value. An \code{ascii} argument is passed to \link{save} function.}
-
-\item{alink}{Logical. Whether the result should be put into \link{alink} function. Pass further arguments with \code{...}
-parameter.}
-}
-\description{
-\code{archive} stores artifacts in the local \link{Repository} and automatically pushes archived
-artifacts to the Github \code{Repository} with which the local \code{Repository} is synchronized
-(via \link{createEmptyGithubRepo} or \link{cloneGithubRepo}). Function stores artifacts on the same
-way as \link{saveToRepo} function. More archivist functionalities that integrate archivist and GitHub API
- can be found here \link{archivist-github-integration} (\link{agithub}).
-}
-\examples{
-\dontrun{
-
-# empty Github Repository creation
-
-library(httr)
-myapp <- oauth_app("github",
-                   key = app_key,
-                   secret = app_secret)
-github_token <- oauth2.0_token(oauth_endpoints("github"),
-                               myapp,
-                               scope = "public_repo")
-# setting options                              
-aoptions("github_token", github_token)
-aoptions("user", user)
-aoptions("password", user)
-
-createEmptyGithubRepo("archive-test4", default = TRUE)
-## artifact's archiving
-exampleVec <- 1:100
-
-# archiving
-archive(exampleVec) -> md5hash_path
-
-## proof that artifact is really archived
-showGithubRepo() # uses options from setGithubRepo
-# let's remove exampleVec
-rm(exampleVec)
-# and load it back from md5hash_path
-aread(md5hash_path)
-
-
-# clone example
-unlink("archive-test", recursive = TRUE)
-cloneGithubRepo('https://github.com/MarcinKosinski/archive-test')
-setGithubRepo(aoptions("user"), "archive-test")
-data(iris)
-archive(iris)
-showGithubRepo()
-
-## alink() option
-vectorLong <- 1:100
-vectorShort <- 1:20
-# archiving
-alink(archive(vectorLong))
-archive(vectorShort, alink = TRUE)
-showGithubRepo()
-
-
-}
-}
-\author{
-Marcin Kosinski, \email{m.p.kosinski@gmail.com}
-}
-\seealso{
-Other archivist: \code{\link{Repository}},
-  \code{\link{Tags}}, \code{\link{\%a\%}},
-  \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
-  \code{\link{aformat}}, \code{\link{ahistory}},
-  \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archivist-github-integration}},
-  \code{\link{archivist-package}}, \code{\link{aread}},
-  \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
-  \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
-  \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
-  \code{\link{searchInLocalRepo}},
-  \code{\link{setLocalRepo}},
-  \code{\link{shinySearchInLocalRepo}},
-  \code{\link{showLocalRepo}},
-  \code{\link{splitTagsLocal}},
-  \code{\link{summaryLocalRepo}},
-  \code{\link{zipLocalRepo}}
-}
-
diff --git a/man/archivist-github-integration.Rd b/man/archivist-github-integration.Rd
deleted file mode 100644
index 02bd8f7..0000000
--- a/man/archivist-github-integration.Rd
+++ /dev/null
@@ -1,102 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/githubFunctionsDescription.R
-\docType{class}
-\name{archivist-github-integration}
-\alias{agithub}
-\alias{archivist-github-integration}
-\title{Archivist Integration With GitHub API}
-\description{
-Set of functions to integrate \link[archivist]{archivist-package} with
-GitHub API \href{https://developer.github.com/v3/}{https://developer.github.com/v3/}.
-
-It is possible to create new GitHub repository with an empty \pkg{archivist}-like \link{Repository}
-with \link{createEmptyGithubRepo} function. 
-
-\link{archive} stores artifacts in the Local
-\code{Repository} and automatically pushes archived artifacts to the Github
-\code{Repository} with which the Local \code{Repository} is synchronized. 
-
-\link{cloneGithubRepo} clones GitHub Repository into the local directory.
-
-\link{deleteGithubRepo} can delete whole GitHub-Repository or only archivist-like Repository
-stored on a GitHub-Repository.
-
-\link{pushRepo} and \link{pullRepo} synchronize Local and GitHub (remote) Repository.
-}
-\details{
-To use this set of functionalities, one firstly has to authorize himselft to the GitHub API.
-It can be done by creating \href{OAuth application on GitHub}{https://github.com/settings/developers}
-(register new application). When application is created, one will have to copy its \code{Client ID} and
-\code{Client Secret} and authorize his github user with this application by running those commands:
- \itemize{
-   \item \code{myapp <- oauth_app("github", key = Client_ID, secret = Client_Secret)},
-   \item \code{github_token <- oauth2.0_token(oauth_endpoints("github"), myapp, scope = "public_repo")}.
- } 
-The \code{scope} limits can be found here 
-\href{https://developer.github.com/v3/oauth/#scopes}{https://developer.github.com/v3/oauth/#scopes}.
-Basically, this is how you grant an access to your application  and give permissions.
-With such a token one is authorized and can work with GitHub API and \pkg{archivist}
-functions devoted to GitHub integration.
- 
-To perform GitHub integration operations such as \code{push}, \code{pull}, \code{commit}, \code{add} etc.
-a user has to pass his GitHub user name (\code{user.name} parameter), user email (\code{user.email}
-parameter) and user password (\code{user.password} parameter). Those parameters can be set globbaly
-with \code{aoptions("user.email", user.email)}, \code{aoptions("user.name", user.name)}
-and \code{aoptions("user.password", user.password)}.
-}
-\note{
-Note that global configuration of the \code{git config} is used for initial commit.
-One can later specify local configuration for the repository with \link[git2r]{config}, e.g
-\code{config(repoName, user.name = "Alice", user.email = "mail_at_gmail.com")}.
-}
-\examples{
-\dontrun{
-library(httr)
-myapp <- oauth_app("github",
-                   key = app_key,
-                   secret = app_secret)
-github_token <- oauth2.0_token(oauth_endpoints("github"),
-                                myapp,
-                                scope = c("public_repo",
-                                          "delete_repo"))
-aoptions("github_token", github_token)
-aoptions("name", user.name)
-aoptions("password", user.password)
-
-## here github_token is used
-createEmptyGithubRepo("Museum")
-createEmptyGithubRepo("Museum-Extras", response = TRUE)
-createEmptyGithubRepo("Gallery", readme = NULL)
-createEmptyGithubRepo("Landfill", repoDescription = "My models and stuff")                                                                
-
-}
-}
-\author{
-Marcin Kosinski, \email{m.p.kosinski@gmail.com}
-}
-\seealso{
-Other archivist: \code{\link{Repository}},
-  \code{\link{Tags}}, \code{\link{\%a\%}},
-  \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
-  \code{\link{aformat}}, \code{\link{ahistory}},
-  \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}}, \code{\link{archivist-package}},
-  \code{\link{aread}}, \code{\link{asearch}},
-  \code{\link{asession}}, \code{\link{cache}},
-  \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
-  \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
-  \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
-  \code{\link{searchInLocalRepo}},
-  \code{\link{setLocalRepo}},
-  \code{\link{shinySearchInLocalRepo}},
-  \code{\link{showLocalRepo}},
-  \code{\link{splitTagsLocal}},
-  \code{\link{summaryLocalRepo}},
-  \code{\link{zipLocalRepo}}
-}
-
diff --git a/man/archivist-package.Rd b/man/archivist-package.Rd
index fcac8b4..27f0157 100644
--- a/man/archivist-package.Rd
+++ b/man/archivist-package.Rd
@@ -37,18 +37,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{aread}}, \code{\link{asearch}},
   \code{\link{asession}}, \code{\link{cache}},
-  \code{\link{cloneGithubRepo}},
   \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/archivistOptions.Rd b/man/archivistOptions.Rd
index 2edff8d..025444a 100644
--- a/man/archivistOptions.Rd
+++ b/man/archivistOptions.Rd
@@ -112,18 +112,16 @@ Other archivist: \code{\link{Repository}},
   \code{\link{Tags}}, \code{\link{\%a\%}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
-  \code{\link{alink}}, \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
-  \code{\link{archivist-package}}, \code{\link{aread}},
-  \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
+  \code{\link{alink}}, \code{\link{archivist-package}},
+  \code{\link{aread}}, \code{\link{asearch}},
+  \code{\link{asession}}, \code{\link{cache}},
   \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/aread.Rd b/man/aread.Rd
index 202cd1c..87020ad 100644
--- a/man/aread.Rd
+++ b/man/aread.Rd
@@ -48,18 +48,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{asearch}},
   \code{\link{asession}}, \code{\link{cache}},
-  \code{\link{cloneGithubRepo}},
   \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/asearch.Rd b/man/asearch.Rd
index fb5108b..fe0681d 100644
--- a/man/asearch.Rd
+++ b/man/asearch.Rd
@@ -113,18 +113,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asession}}, \code{\link{cache}},
-  \code{\link{cloneGithubRepo}},
   \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/asession.Rd b/man/asession.Rd
index 0f7a547..bb18f03 100644
--- a/man/asession.Rd
+++ b/man/asession.Rd
@@ -40,18 +40,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{cache}},
-  \code{\link{cloneGithubRepo}},
   \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/cache.Rd b/man/cache.Rd
index 6dbabb2..458ec2e 100644
--- a/man/cache.Rd
+++ b/man/cache.Rd
@@ -92,18 +92,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cloneGithubRepo}},
   \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/cloneGithubRepo.Rd b/man/cloneGithubRepo.Rd
deleted file mode 100644
index 866eed3..0000000
--- a/man/cloneGithubRepo.Rd
+++ /dev/null
@@ -1,106 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/cloneGithubRepo.R
-\name{cloneGithubRepo}
-\alias{cloneGithubRepo}
-\title{Clone Github Repository}
-\usage{
-cloneGithubRepo(repoURL, repoDir = NULL, default = FALSE, ...)
-}
-\arguments{
-\item{repoURL}{The remote repository to clone.}
-
-\item{repoDir}{Local directory to clone to. If \code{NULL}, by default, creates a local directory,
-which corresponds to the name after last \code{/} in \code{repoURL}.}
-
-\item{default}{Sets cloned Repository as default Local and GitHub Repository. 
-If \code{default = TRUE} then \code{repoDir} (last piece of \code{repoURL}) is set as default Local Repository 
- and for GitHub repository also the \code{user} from  \code{repoURL} is set as default GitHub user).}
-
-\item{...}{Further parameters passed to \link[git2r]{clone}.}
-}
-\description{
-\code{cloneGithubRepo} is a wrapper around \code{git clone} and clones GitHub Repository
-into the \code{repoDir} directory.
-
-More archivist functionalities that integrate archivist and GitHub API can be found here \link{archivist-github-integration} (\link{agithub}).
-}
-\examples{
-\dontrun{
-
-cloneGithubRepo("https://github.com/MarcinKosinski/Museum")
-cloneGithubRepo("https://github.com/MarcinKosinski/Museum-Extra")
-
-
-# empty Github Repository creation
-
-library(httr)
-myapp <- oauth_app("github",
-                   key = app_key,
-                   secret = app_secret)
-github_token <- oauth2.0_token(oauth_endpoints("github"),
-                               myapp,
-                               scope = "public_repo")
-# setting options                              
-aoptions("github_token", github_token)
-aoptions("name", user_name)
-aoptions("password", user_password)
-
-createEmptyGithubRepo("archive-test4")
-setGithubRepo(aoptions("name"), "archive-test4")
-## artifact's archiving
-przyklad <- 1:100
-
-# archiving
-archive(przyklad) -> md5hash_path
-
-## proof that artifact is really archived
-showGithubRepo() # uses options from setGithubRepo
-# let's remove przyklad
-rm(przyklad)
-# and load it back from md5hash_path
-aread(md5hash_path)
-
-
-# clone example
-unlink("archive-test", recursive = TRUE)
-cloneGithubRepo('https://github.com/MarcinKosinski/archive-test')
-setGithubRepo(aoptions("name"), "archive-test")
-# equivalent is cloneGithubRepo('https://github.com/MarcinKosinski/archive-test', default = TRUE)
-# check if default is set with
-# aoptions('repoDir'); aoptions('repo'); aoptions('user')
-data(iris)
-archive(iris)
-showGithubRepo()
-
-
-}
-}
-\author{
-Marcin Kosinski, \email{m.p.kosinski@gmail.com}
-}
-\seealso{
-Other archivist: \code{\link{Repository}},
-  \code{\link{Tags}}, \code{\link{\%a\%}},
-  \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
-  \code{\link{aformat}}, \code{\link{ahistory}},
-  \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
-  \code{\link{archivist-package}}, \code{\link{aread}},
-  \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
-  \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
-  \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
-  \code{\link{searchInLocalRepo}},
-  \code{\link{setLocalRepo}},
-  \code{\link{shinySearchInLocalRepo}},
-  \code{\link{showLocalRepo}},
-  \code{\link{splitTagsLocal}},
-  \code{\link{summaryLocalRepo}},
-  \code{\link{zipLocalRepo}}
-}
-
diff --git a/man/copyToRepo.Rd b/man/copyToRepo.Rd
index 15808bf..4916bd4 100644
--- a/man/copyToRepo.Rd
+++ b/man/copyToRepo.Rd
@@ -151,17 +151,14 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/createEmptyRepo.Rd b/man/createEmptyRepo.Rd
index ae62be2..2e7f5b6 100644
--- a/man/createEmptyRepo.Rd
+++ b/man/createEmptyRepo.Rd
@@ -1,26 +1,13 @@
 % Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/createEmptyRepo.R
-\name{createEmptyRepo}
-\alias{createEmptyGithubRepo}
+\name{createEmptyLocalRepo}
 \alias{createEmptyLocalRepo}
 \alias{createEmptyRepo}
 \title{Create an Empty Repository}
 \usage{
-createEmptyRepo(repoDir, force = TRUE, default = FALSE, repo,
-  github_token = aoptions("github_token"), user = aoptions("user"),
-  password = aoptions("password"),
-  repoDescription = aoptions("repoDescription"),
-  readmeDescription = aoptions("readmeDescription"),
-  response = aoptions("response"), type = "local")
-
 createEmptyLocalRepo(repoDir, force = TRUE, default = FALSE)
 
-createEmptyGithubRepo(repo, github_token = aoptions("github_token"),
-  user = aoptions("user"), repoDir = NULL,
-  password = aoptions("password"),
-  repoDescription = aoptions("repoDescription"),
-  readmeDescription = aoptions("readmeDescription"),
-  response = aoptions("response"), default = FALSE)
+createEmptyRepo(repoDir, force = TRUE, default = FALSE)
 }
 \arguments{
 \item{repoDir}{A character that specifies the directory for the Repository which is to be made. While working with GitHub Repository, this will
@@ -32,36 +19,11 @@ Default set to \code{force = TRUE}.}
 
 \item{default}{If \code{default = TRUE} then \code{repoDir} (\code{repo}) is set as default local repository 
 (for GitHub version also the \code{user} is set as default GitHub user).}
-
-\item{repo}{While working with a Github repository. A character denoting new GitHub repository name. White spaces will be substitued with a dash.}
-
-\item{github_token}{While working with a Github repository. An OAuth GitHub Token created with the \link{oauth2.0_token} function. See \link{archivist-github-integration}.
-Can be set globally with \code{aoptions("github_token", github_token)}.}
-
-\item{user}{While working with a Github repository. A character denoting GitHub user name. Can be set globally with \code{aoptions("user", user)}.
-See \link{archivist-github-integration}.}
-
-\item{password}{While working with a Github repository. A character denoting GitHub user password. Can be set globally with \code{aoptions("password", password)}.
-See \link{archivist-github-integration}.}
-
-\item{repoDescription}{While working with a Github repository. A character specifing the new GitHub repository description.}
-
-\item{readmeDescription}{While working with a Github repository. A character of the content of \code{README.md} file. By default a description of \link{Repository}.
-Can be set globally with \code{aoptions("readmeDescription", readmeDescription)}. In order to omit 
-\code{README.md} file set \code{aoptions("readmeDescription", NULL)}.}
-
-\item{response}{A logical value. Should the GitHub API response be returned.}
-
-\item{type}{A character. Whether to use \code{Local} or \code{Github} version while using \code{createEmptyRepo} wrapper.}
 }
 \description{
 \code{createEmptyLocalRepo} creates an empty \link{Repository} in the given directory in which archived artifacts will be stored.
-\code{createEmptyGithubRepo} creates a new GitHub repository with an empty \pkg{archivist}-like \link{Repository} and
-also creates a local \code{Repository} with \code{createEmptyLocalRepo} which is git-synchronized with
-new GitHub repository. \code{createEmptyRepo} is a wrapper around \code{createEmptyLocalRepo} and \code{createEmptyGithubRepo}
- functions and by default triggers \code{createEmptyLocalRepo} to maintain consistency with the previous \pkg{archivist} versions (<1.8.6.0)
- where there was only \code{createEmptyRepo} which created local \code{Repository}. To learn more about
- \code{Archivist Integration With GitHub API} visit \link{archivist-github-integration} (\link{agithub}).
+\code{createEmptyRepo} is a wrapper around \code{createEmptyLocalRepo} to maintain consistency with the previous \pkg{archivist} versions (<1.8.6.0)
+ where there was only \code{createEmptyRepo} which created Local \code{Repository}.
 }
 \details{
 At least one Repository must be initialized before using other functions from the \pkg{archivist} package. 
@@ -115,64 +77,6 @@ deleteRepo("def", TRUE)
 
 rm( exampleRepoDir )
 
-## GitHub version
-
-library(httr)
-myapp <- oauth_app("github",
-                   key = app_key,
-                   secret = app_secret)
-github_token <- oauth2.0_token(oauth_endpoints("github"),
-                                myapp,
-                                scope = "public_repo")
-aoptions("github_token", github_token)
-aoptions("user", user)
-aoptions("password", password)
-
-createEmptyGithubRepo("Museum")
-createEmptyGithubRepo("Museum-Extras", response = TRUE)
-createEmptyGithubRepo("Gallery", readmeDescription = NULL)
-createEmptyGithubRepo("Landfill", 
-        repoDescription = "My models and stuff") 
-createEmptyGithubRepo("MuseumYYYY", repoDir = "Museum_YY")
-        
-        
-        
-# empty Github Repository creation
-
-library(httr)
-myapp <- oauth_app("github",
-                   key = app_key,
-                   secret = app_secret)
-github_token <- oauth2.0_token(oauth_endpoints("github"),
-                               myapp,
-                               scope = "public_repo")
-# setting options                              
-aoptions("github_token", github_token)
-aoptions("user", user)
-aoptions("password", password)
-
-createEmptyGithubRepo("archive-test4", default = TRUE)
-## artifact's archiving
-przyklad <- 1:100
-
-# archiving
-archive(przyklad) -> md5hash_path
-
-## proof that artifact is really archived
-showGithubRepo() # uses options from setGithubRepo
-# let's remove przyklad
-rm(przyklad)
-# and load it back from md5hash_path
-aread(md5hash_path)
-
-
-# clone example
-unlink("archive-test", recursive = TRUE)
-cloneGithubRepo('https://github.com/MarcinKosinski/archive-test')
-setGithubRepo(aoptions("user"), "archive-test")
-data(iris)
-archive(iris)
-showGithubRepo()
 
 }
 }
@@ -185,17 +89,14 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/createMDGallery.Rd b/man/createMDGallery.Rd
index e15acc1..0d82647 100644
--- a/man/createMDGallery.Rd
+++ b/man/createMDGallery.Rd
@@ -65,17 +65,14 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/deleteRepo.Rd b/man/deleteRepo.Rd
index 2a3b466..0e23854 100644
--- a/man/deleteRepo.Rd
+++ b/man/deleteRepo.Rd
@@ -1,64 +1,31 @@
 % Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/deleteRepo.R
-\name{deleteRepo}
-\alias{deleteGithubRepo}
+\name{deleteLocalRepo}
 \alias{deleteLocalRepo}
 \alias{deleteRepo}
 \title{Delete the Existing Repository from the Given Directory}
 \usage{
-deleteRepo(repoDir, repo, github_token = aoptions("github_token"),
-  user = aoptions("user"), password = aoptions("password"), unset = FALSE,
-  deleteRoot = FALSE, subdir = NULL, response = aoptions("response"),
-  type = "local")
-
 deleteLocalRepo(repoDir, deleteRoot = FALSE, unset = FALSE)
 
-deleteGithubRepo(repo, github_token = aoptions("github_token"),
-  user = aoptions("user"), password = aoptions("password"), unset = FALSE,
-  deleteRoot = FALSE, subdir = NULL, response = aoptions("response"))
+deleteRepo(repoDir, deleteRoot = FALSE, unset = FALSE)
 }
 \arguments{
 \item{repoDir}{A character that specifies the directory for the Repository
 which is to be deleted.}
 
-\item{repo}{While working with a Github repository. A character denoting GitHub repository name to be deleted.}
-
-\item{github_token}{While working with a Github repository. An OAuth GitHub Token created with the \link{oauth2.0_token} function. To delete GitHub Repository you
-need to have \code{delete_repo} scope set - see examples. See \link{archivist-github-integration}.
-Can be set globally with \code{aoptions("github_token", github_token)}.}
-
-\item{user}{While working with a Github repository. A character denoting GitHub user name. Can be set globally with \code{aoptions("user", user)}.
-See \link{archivist-github-integration}.}
-
-\item{password}{Only when \code{deleteRoot = FALSE}. While working with a Github repository. A character denoting GitHub user password. Can be set globally with \code{aoptions("password", password)}.
-See \link{archivist-github-integration}.}
-
-\item{unset}{A logical. If deleted \code{repoDir/repo} was set to be default Local/GitHub Repository
-and \code{unset} is TRUE, then \code{repoDir/repo} is unset as a default Local/GitHub Repository (\code{aoptions('repoDir/repo', NULL, T)}).}
-
 \item{deleteRoot}{A logical value that specifies if the repository root directory
 should be deleted for Local Repository or for GitHub whether to delete whole GitHub-Repository.}
 
-\item{subdir}{Only when \code{deleteRoot = FALSE}. Subdirectory in which the archivist-Repository is stored on a GitHub Repository.
-If it's in main directory, then specify to \code{NULL} (default).}
-
-\item{response}{A logical value. Should the GitHub API response be returned (only when \code{deleteRoot = TRUE}).}
-
-\item{type}{A character. Whether to use \code{Local} or \code{Github} version while using \code{deleteRepo} wrapper.}
+\item{unset}{A logical. If deleted \code{repoDir/repo} was set to be default Local/GitHub Repository
+and \code{unset} is TRUE, then \code{repoDir/repo} is unset as a default Local/GitHub Repository (\code{aoptions('repoDir/repo', NULL, T)}).}
 }
 \description{
 \code{deleteRepo} deletes the existing \link{Repository} from the given directory.
 As a result all artifacts from \code{gallery} folder are removed and database \code{backpack.db}
-is deleted. \code{deleteGithubRepo} can delete whole GitHub-Repository or only archivist-like Repository
-stored on a GitHub-Repository (then it requires more parameters to be specified).
-To learn more about  \code{Archivist Integration With GitHub API} visit
- \link{archivist-github-integration} (\link{agithub}).
+is deleted.
 }
 \details{
-To delete GitHub Repository you
-need to have \code{delete_repo} scope set - see examples.
-
-Since version 1.9 \code{deleteRepo} is a wrapper around \code{deleteLocalRepo} (in earlier versions deleteRepo) and \code{deleteGithubRepo}
+Since version 1.9 \code{deleteRepo} is a wrapper around \code{deleteLocalRepo} (in earlier versions deleteRepo) and \link[archivist.github]{deleteGitHubRepo}
  functions and by default triggers \code{deleteLocalRepo} to maintain consistency with the previous \pkg{archivist} versions (<1.9.0)
  where there was only \code{deleteRepo} which deleted local \code{Repository}.
 }
@@ -73,25 +40,6 @@ webpage.
 \examples{
 \dontrun{
 
-########################
-#### GitHub version ####
-########################
-
-library(httr)
-myapp <- oauth_app("github",
-                   key = app_key,
-                   secret = app_secret)
-github_token <- oauth2.0_token(oauth_endpoints("github"),
-                                myapp,
-                                scope = c("public_repo",
-                                          "delete_repo"))
-aoptions("github_token", github_token)
-aoptions("user", user)
-aoptions("password", password)
-
-createEmptyGithubRepo("Museum")
-deleteGithubRepo(repo = "Museum", deleteRoot = TRUE, response = TRUE)
-
 ########################
 #### Local version ####
 ########################
@@ -206,10 +154,6 @@ deleteRepo(repoDir = "defRepo", deleteRoot = TRUE)
 # or if aoptions('repodir') == repodir then 
 # deleteRepo(repoDir, deleteRoot = TRUE, unset = TRUE)
 
-
-
-
-
 }
 
 }
@@ -222,18 +166,14 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
   \code{\link{createMDGallery}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/getRemoteHook.Rd b/man/getRemoteHook.Rd
index 9094bc0..574922d 100644
--- a/man/getRemoteHook.Rd
+++ b/man/getRemoteHook.Rd
@@ -42,18 +42,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/getTags.Rd b/man/getTags.Rd
index 4c11c95..6744522 100644
--- a/man/getTags.Rd
+++ b/man/getTags.Rd
@@ -142,18 +142,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
@@ -167,18 +164,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/loadFromRepo.Rd b/man/loadFromRepo.Rd
index 7bbbd1e..34fa3a4 100644
--- a/man/loadFromRepo.Rd
+++ b/man/loadFromRepo.Rd
@@ -265,17 +265,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
-  \code{\link{md5hash}}, \code{\link{pushRepo}},
-  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
+  \code{\link{md5hash}}, \code{\link{rmFromRepo}},
+  \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/magrittr.Rd b/man/magrittr.Rd
index 8aa0bce..5c3b07c 100644
--- a/man/magrittr.Rd
+++ b/man/magrittr.Rd
@@ -64,18 +64,16 @@ Other archivist: \code{\link{Repository}},
   \code{\link{Tags}}, \code{\link{addHooksToPrint}},
   \code{\link{addTagsRepo}}, \code{\link{aformat}},
   \code{\link{ahistory}}, \code{\link{alink}},
-  \code{\link{aoptions}}, \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
-  \code{\link{archivist-package}}, \code{\link{aread}},
-  \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
+  \code{\link{aoptions}}, \code{\link{archivist-package}},
+  \code{\link{aread}}, \code{\link{asearch}},
+  \code{\link{asession}}, \code{\link{cache}},
   \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/md5hash.Rd b/man/md5hash.Rd
index b292dc4..cbe30ab 100644
--- a/man/md5hash.Rd
+++ b/man/md5hash.Rd
@@ -57,16 +57,14 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
-  \code{\link{loadFromLocalRepo}}, \code{\link{pushRepo}},
+  \code{\link{loadFromLocalRepo}},
   \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
diff --git a/man/pushRepo.Rd b/man/pushRepo.Rd
deleted file mode 100644
index 8f41b62..0000000
--- a/man/pushRepo.Rd
+++ /dev/null
@@ -1,95 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/push_pull_Repo.R
-\name{pushRepo}
-\alias{pullRepo}
-\alias{pushRepo}
-\title{Push and Pull for Local Repository Synchronized with GitHub}
-\usage{
-pushRepo(repoDir = aoptions("repoDir"),
-  commitMessage = aoptions("commitMessage"), repo = aoptions("repo"),
-  user = aoptions("user"), password = aoptions("password"),
-  files = c("gallery", "backpack.db"), ...)
-
-pullRepo(repoDir = aoptions("repoDir"), user = aoptions("user"),
-  password = aoptions("password"), ...)
-}
-\arguments{
-\item{repoDir}{A character specifing the directory to Local \code{Repository} to/from which artifacts will be pulled/pushed to GitHub.}
-
-\item{commitMessage}{A character denoting a message added to the commit while performing push.
-By default specified to \code{NULL} which corresponds to commit message \code{archivist: pushRepo}.}
-
-\item{repo}{A character denoting GitHub repository name and synchronized local existing directory in which an artifact will be saved.}
-
-\item{user}{A character denoting GitHub user name. Can be set globally with \code{aoptions("user", user)}.
-See \link{archivist-github-integration}.}
-
-\item{password}{A character denoting GitHub user password. Can be set globally with \code{aoptions("password", password)}.
-See \link{archivist-github-integration}.}
-
-\item{files}{A character vector containing directories to files that should be commited and pushed. The working directory
-is \code{repoDir}. By default all uncommited artifacts and \code{backpack.db} will be pushed.}
-
-\item{...}{Further arguments passed to \link[git2r]{push} or \link[git2r]{pull}.}
-}
-\description{
-\code{pushRepo} adds files, commits them and pushes from Local \link{Repository} to synchronized GitHub one. 
-\code{pullRepo} pulls (\code{git pull}) changes from remote GitHub \code{Repository} to the correspoding Local one.
-More archivist functionalities that integrate archivist and GitHub API can be found here \link{archivist-github-integration} (\link{agithub}).
-}
-\note{
-To check the \code{status} (\code{git status}) of the Repository use \code{git2r::status(repository(repoDir))}. See examples.
-}
-\examples{
-\dontrun{
-
-library(httr)
-myapp <- oauth_app("github",
-                   key = app_key,
-                   secret = app_secret)
-github_token <- oauth2.0_token(oauth_endpoints("github"),
-                                myapp,
-                                scope = c("public_repo",
-                                          "delete_repo"))
-aoptions("github_token", github_token)
-aoptions("name", user.name)
-aoptions("password", user.password)
-
-createEmptyGithubRepo("Museum", default = TRUE) # here github_token is used
-data(iris)
-saveToRepo(iris)
-git2r::status(repository('Museum'))
-pushRepo(commitMessage = "add iris")
-git2r::status(repository('Museum'))
-
-}
-}
-\author{
-Marcin Kosinski, \email{m.p.kosinski@gmail.com}
-}
-\seealso{
-Other archivist: \code{\link{Repository}},
-  \code{\link{Tags}}, \code{\link{\%a\%}},
-  \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
-  \code{\link{aformat}}, \code{\link{ahistory}},
-  \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
-  \code{\link{archivist-package}}, \code{\link{aread}},
-  \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
-  \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
-  \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
-  \code{\link{searchInLocalRepo}},
-  \code{\link{setLocalRepo}},
-  \code{\link{shinySearchInLocalRepo}},
-  \code{\link{showLocalRepo}},
-  \code{\link{splitTagsLocal}},
-  \code{\link{summaryLocalRepo}},
-  \code{\link{zipLocalRepo}}
-}
-
diff --git a/man/rmFromRepo.Rd b/man/rmFromRepo.Rd
index 5ddc0a7..de94bd5 100644
--- a/man/rmFromRepo.Rd
+++ b/man/rmFromRepo.Rd
@@ -323,17 +323,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{saveToRepo}},
+  \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/saveToRepo.Rd b/man/saveToRepo.Rd
index 6f274d7..1003fef 100644
--- a/man/saveToRepo.Rd
+++ b/man/saveToRepo.Rd
@@ -7,7 +7,8 @@
 saveToRepo(artifact, repoDir = NULL, archiveData = TRUE,
   archiveTags = TRUE, archiveMiniature = TRUE, archiveSessionInfo = TRUE,
   force = TRUE, rememberName = TRUE, value = FALSE, ..., userTags = c(),
-  silent = aoptions("silent"), ascii = FALSE)
+  silent = aoptions("silent"), ascii = FALSE,
+  artifactName = deparse(substitute(artifact)))
 }
 \arguments{
 \item{artifact}{An arbitrary R artifact to be saved. For supported artifacts see details.}
@@ -40,6 +41,8 @@ Further arguments passed to \link{head}. See Details section about \code{firtsRo
 \item{silent}{If TRUE produces no warnings.}
 
 \item{ascii}{A logical value. An \code{ascii} argument is passed to \link{save} function.}
+
+\item{artifactName}{The name of the artifact with which it should be archived.}
 }
 \value{
 As a result of calling this function a character string is returned, which determines
@@ -287,17 +290,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
+  \code{\link{rmFromRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/searchInRepo.Rd b/man/searchInRepo.Rd
index aed8c49..9279a8d 100644
--- a/man/searchInRepo.Rd
+++ b/man/searchInRepo.Rd
@@ -212,18 +212,16 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}}, \code{\link{setLocalRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
+  \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
   \code{\link{showLocalRepo}},
   \code{\link{splitTagsLocal}},
diff --git a/man/setRepo.Rd b/man/setRepo.Rd
index adfcf29..950127c 100644
--- a/man/setRepo.Rd
+++ b/man/setRepo.Rd
@@ -125,18 +125,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
   \code{\link{showLocalRepo}},
@@ -149,18 +146,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
   \code{\link{showLocalRepo}},
diff --git a/man/shinySearchInRepo.Rd b/man/shinySearchInRepo.Rd
index 466d809..8a05b6c 100644
--- a/man/shinySearchInRepo.Rd
+++ b/man/shinySearchInRepo.Rd
@@ -60,18 +60,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}}, \code{\link{showLocalRepo}},
   \code{\link{splitTagsLocal}},
diff --git a/man/showRepo.Rd b/man/showRepo.Rd
index 5535ede..e9f6e3c 100644
--- a/man/showRepo.Rd
+++ b/man/showRepo.Rd
@@ -208,18 +208,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/splitTags.Rd b/man/splitTags.Rd
index 55bb610..160c20c 100644
--- a/man/splitTags.Rd
+++ b/man/splitTags.Rd
@@ -102,18 +102,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/summaryRepo.Rd b/man/summaryRepo.Rd
index 6c8df57..6e00e40 100644
--- a/man/summaryRepo.Rd
+++ b/man/summaryRepo.Rd
@@ -150,18 +150,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
diff --git a/man/zipRepo.Rd b/man/zipRepo.Rd
index 7804ac7..d72705c 100644
--- a/man/zipRepo.Rd
+++ b/man/zipRepo.Rd
@@ -107,18 +107,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},
@@ -131,18 +128,15 @@ Other archivist: \code{\link{Repository}},
   \code{\link{addHooksToPrint}}, \code{\link{addTagsRepo}},
   \code{\link{aformat}}, \code{\link{ahistory}},
   \code{\link{alink}}, \code{\link{aoptions}},
-  \code{\link{archive}},
-  \code{\link{archivist-github-integration}},
   \code{\link{archivist-package}}, \code{\link{aread}},
   \code{\link{asearch}}, \code{\link{asession}},
-  \code{\link{cache}}, \code{\link{cloneGithubRepo}},
-  \code{\link{copyLocalRepo}},
-  \code{\link{createEmptyRepo}},
-  \code{\link{createMDGallery}}, \code{\link{deleteRepo}},
+  \code{\link{cache}}, \code{\link{copyLocalRepo}},
+  \code{\link{createEmptyLocalRepo}},
+  \code{\link{createMDGallery}},
+  \code{\link{deleteLocalRepo}},
   \code{\link{getRemoteHook}}, \code{\link{getTagsLocal}},
   \code{\link{loadFromLocalRepo}}, \code{\link{md5hash}},
-  \code{\link{pushRepo}}, \code{\link{rmFromRepo}},
-  \code{\link{saveToRepo}},
+  \code{\link{rmFromRepo}}, \code{\link{saveToRepo}},
   \code{\link{searchInLocalRepo}},
   \code{\link{setLocalRepo}},
   \code{\link{shinySearchInLocalRepo}},