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Duplicated taxon in "Gene Association Heatmap"

Status: Open.

#61 In pbradleylab/phylogenize;

· tran986 opened on Sep 25, 2025

Add back in _ to names

enhancementNew feature or requestNew feature or request

Status: Open.

#60 In pbradleylab/phylogenize;

· Kekananen opened on Sep 15, 2025

Compare Phylogenize2 to previous versions

Status: Open.

#51 In pbradleylab/phylogenize;

· pbradz opened on Jul 7, 2025

Incorporate gene counts per genome into pangenomes

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#50 In pbradleylab/phylogenize;

· pbradz opened on Jul 7, 2025

GTDB database is missing genes

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#49 In pbradleylab/phylogenize;

· pbradz opened on Jun 26, 2025

Expansion of Annotations to include GO

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#43 In pbradleylab/phylogenize;

· Kekananen opened on Jun 12, 2025

Improve database installation with install.data.zenodo()

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#41 In pbradleylab/phylogenize;

· pbradz opened on Jun 11, 2025

Add information about how to generate count matrix

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#36 In pbradleylab/phylogenize;

· pbradz opened on Jun 11, 2025